1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaccatcttcagtttaaaaaaaataaaaatctatgagcatgctttgtagctaatttaaaaagagtccttggatgttgagcattactgtgttattttttagGCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCTTTCAACACCTTCTTCAGCGAGACCGGTGCCGGAAAGCACGTGCCTCGTG
species | Glycine max |
transcript | GLYMA11G04750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGTCGGAAATGCTTGCTGGGAGCTTTATTGCCTCGAGCATGCCATTCAG GCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCTEST: gi|9204404|gb|BE330628.1|BE330628
genomic: AGGTCGGAAATGCTTGCTGGGAGCTTTATTGCCTCGAGCATGCCATTCAGgttcccaatt ... tattttttagGCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCT
EST: AGGTCGGAAATGCTTGCTGGGAGCTTTATTGCCTCGAGCATGCCATTCAG GCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCTEST: gi|209705848|gb|BW675953.1|BW675953
genomic: AGGTCGGAAATGCTTGCTGGGAGCTTTATTGCCTCGAGCATGCCATTCAGgttcccaatt ... tattttttagGCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCT
EST: AGGTCGGAAATGCTTGCTGGGAGCTTTATTGCCTCGAGCATGCCATTCAG GCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCT
genomic: AGGTCGGAAATGCTTGCTGGGAGCTTTATTGCCTCGAGCATGCCATTCAGgttcccaatt ... tattttttagGCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCT
gtagctaatttaaaaagagtccttggatgttgagcattactgtgttattttttagGCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCTTTCAACACCTTCTTCAGCGAGACCGGTGCCGGAAAGCACGTGCCTCGTG
agctaat putative branch site (score: 3)
ttatttttt putative PPT
taatttaaaaagagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccatcttcagtttaaaaaaaataaaaatctatgagcatgctttgtagctaatttaaaaagagtccttggatgttgagcattactgtgttattttttagGCTGATGGGCAGATGCCGAGTGATAAGACCATAGGTGGTGGTGACGATGCTTTCAACACCTTCTTCAGCGAGACCGGTGCCGGAAAGCACGTGCCTCGTG
- -catcttc
- - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattac