Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttctttgactgtggcctgtgtgtatttttatttctttagcttcattttactagcacatttttgttgaattcaagttgatattgatttttctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG

Basic information

species Glycine max
transcript GLYMA11G04330.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G075719_T01 (Zea mays), 3'ss of exon 1
---gcttctttgactgtggcctgtgtgtatttttatttctttagcttcatt--ttactagcacatttttgttgaattcaagttgatattgatttttctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG
     |  ||||| | |    | |||   ||||   || ||   |   | |  |   |||   |||   |||   |  |||||| | |     | |   |||||||||||||||||||||||||| || ||||| || ||||| || |||||| |||||||  |||| ||  | ||
agtattattttgagt-taatttatgtaatttttggcttgttgtacagtaatgctggttagtctattcaggtttgctcaaagttgttttc----tctggtatgcagGCTACAATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGAACTGTGAGACTCCAACTCTG

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 1
gcttctttgactgtggcctgtgtgtatttttatttctttagcttcattttactagcacatttttgttgaattcaagtt-----gatattgatttttctc--atgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG
       |   |   |  | | | ||  | ||||| ||| |||| ||  |||   |   |  || ||  ||||| |||      |  ||| ||| ||||  ||||||||||| |||||||||||||| || ||||| || ||||| || |||||| |||||||  |||| ||  | ||
-----cgtaggtcaagtttttttatacctgtattt-tttggctt-atcatacagtctgctggttattctattcaggtttgctcaaagttgttttctctcgaatgcagGCTACGATTGGTATTGATTTCCTGTCAAAGACAATGTACCTTGAAGATAGAACTGTGAGACTCCAACTCTG

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G44610.1 (Arabidopsis thaliana), 3'ss of exon 1
gcttctttgactgtggcctgtgtgt-atttttatttctttagcttcattttactagcacatttttgttgaattcaagttgatattgatttttctcatg-----cagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG
     ||   ||        | ||| |    |  ||  ||| | ||||||||| || |  || ||  |   |  |||| | | ||   || | ||||      ||||| |||||||||||||||||||||||||| || ||||| || ||||||||||| ||  |||| ||||||||
----tttaagctcctaataatatgtgaaccatgcttgcttatcgtcattttac-agaatgttcttccttt-tctaagtagtttttatgttgtttcataatcatcagGCCACAATTGGTATTGATTTTCTATCAAAGACAATGTACCTTGAAGATCGAACGGTCAGACTTCAGTTGTG

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv15s0021g00640.t01 (Vitis vinifera), 3'ss of exon 1
gcttctttgactgtggcctgtgtgtattt---ttatttctttagcttcattttactagcacatttttgttgaattcaagttgatattgatttttctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG
   |   |    || || ||| |  |  |   |||||  | |   |    |    | |     |||| ||      ||| |  | ||  |  ||  ||| |||||||| |||||||| |||||||||||||| || ||||| || |||||||| || || ||  ||||  | ||
--ctaaatataggtagc-tgtatacacctagcttattcttctccataaggtgcttttgttttattttctttttcctaagcttgtgttattaattgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGACGGTCCGTTTGCAACTCTG

upper sequence: GLYMA11G04330.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S39_147V6.2 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------------------gcttctttgactgtggcctgtgtgtatttttatttctttagcttcattttactagcacat-ttttgttgaattcaagtt----gatattgat---ttttctcatg----------cagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG
                                                                     | ||  | |||     || ||  |  ||| |||  ||| | ||  | |    || || | |  ||     |||||| |    | |||||||   ||||| | ||          ||||| || ||||||||||||||||| || || || |||||||| || ||||| |||||| |||| ||| | ||
gttagcttctttccctcctagtcttcttgcataaaaattgtgtgctgctgacatttctggtttgccgtacatcaataactccatactctggatggtttcattctttttgttttttctagtaagaacctgtcctggcaggttcaaggttggtgctattgatgagttttcccttgataactttggcagGCAACTATTGGTATTGATTTTCTCTCCAAGACCATGTATCTTGAGGATCGCACTGTTAGACTACAGCTCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321711|gb|FK013159.1|FK013159
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298167985|gb|HO013248.1|HO013248
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCAATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|21256067|gb|BQ452955.1|BQ452955
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTAT-AATAATTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|16995877|gb|BM085249.1|BM085249
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|21285946|gb|BQ473817.1|BQ473817
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAATATCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|22521828|gb|BU080639.1|BU080639
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|17519308|gb|BM188350.1|BM188350
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298172883|gb|HO019867.1|HO019867
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|18038975|gb|BM307269.1|BM307269
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|15336976|gb|BI497632.1|BI497632
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|19345951|gb|BM890831.1|BM890831
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|13562826|gb|BG551046.1|BG551046
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|193354540|gb|FK319048.1|FK319048
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTNTGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|207718410|gb|GD700416.1|GD700416
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|19270723|gb|BM886979.1|BM886979
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|27809327|gb|CB063749.1|CB063749
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|6482030|gb|AW201301.1|AW201301
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|23064316|gb|BU579081.1|BU579081
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|16347115|gb|BI972710.1|BI972710
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAAATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298179445|gb|HO027916.1|HO027916
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|15200563|gb|BI424413.1|BI424413
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|192312364|gb|FK005368.1|FK005368
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|192295843|gb|FG990881.1|FG990881
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|15203113|gb|BI425881.1|BI425881
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|6963922|gb|AW432615.1|AW432615
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|15285867|gb|BI469758.1|BI469758
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298166969|gb|HO010408.1|HO010408
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298164387|gb|HO014032.1|HO014032
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298197945|gb|HO039484.1|HO039484
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|19347531|gb|BM892411.1|BM892411
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|192325398|gb|FK018369.1|FK018369
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|7234439|gb|AW569776.1|AW569776
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|20207974|gb|BQ134063.1|BQ134063
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|27426112|gb|CA937632.1|CA937632
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|11274538|gb|BF324884.1|BF324884
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298191544|gb|HO039023.1|HO039023
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCATATACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|213603624|gb|DB966780.1|DB966780
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|192321351|gb|FK012112.1|FK012112
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|192312363|gb|FK005367.1|FK005367
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|254335665|gb|GR847193.1|GR847193
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|14258722|gb|BG881630.1|BG881630
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298174968|gb|HO014885.1|HO014885
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTGTGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|15000837|gb|BI321651.1|BI321651
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAT                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298166706|gb|HO010145.1|HO010145
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|254344521|gb|GR851218.1|GR851218
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|298172675|gb|HO019715.1|HO019715
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|254318765|gb|GR830329.1|GR830329
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|7924237|gb|AW830263.1|AW830263
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|12690087|gb|BG156423.1|BG156423
EST:     TCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: TCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|254317510|gb|GR826494.1|GR826494
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|4291546|gb|AI441777.1|AI441777
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|14259139|gb|BG882047.1|BG882047
EST:     CCATCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|13788156|gb|BG650748.1|BG650748
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|23053072|gb|BU577563.1|BU577563
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
EST: gi|11412380|gb|BF424391.1|BF424391
EST:     CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAG                         GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA
genomic: CCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACCTATCAGgtacgtttct ... tctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttactagcacatttttgttgaattcaagttgatattgatttttctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG
                                   tattgat  putative branch site (score: 3)
                                         tttttctcat  CT-rich tract
                               ttgatattgattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcttctttgactgtggcctgtgtgtatttttatttctttagcttcattttactagcacatttttgttgaattcaagttgatattgatttttctcatgcagGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
gcttctt
- - - - -actgtgg
- - - - - - - - cctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaattc