Sequence
atgc intronic sequence ATGC exonic sequence...attgtacttgaaattttatttacaacagttctatttgaaatctgagaccaatttcaattaaacggaatgtgacatttatatgtaaaaaattctactgcagGGCAAGCAAAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATC
Basic information
species | Glycine max |
transcript | GLYMA11G02570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G02570.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os07g27790.1 (Oryza sativa), 3'ss of exon 3
-----------------------------------------------------------------------------------------attgtacttgaaattttatttacaacagttctatttgaaatctgagaccaatttcaattaaacggaatgtgacatttatatgtaaaaaattctac-----tgcagGGCAAGCAAAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATC
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gtagtattctgctcttatttcccctataataccaccttacatgacttagaccaacaattaacgtggagaaaatttccatgtgcttcactggagtgccgtaattaactctaatggaaaaacaaacaaaaacattacagtttgttctgacaattttagtttgttccttaattcgaggtacttgtatatggttgcagGGAAAGCAAAGCATTTCACTAGAACCTGGTGGTCAGTTTGAACTTAGTGGTGCTCCTCTTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATC
upper sequence: GLYMA11G02570.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g03820.2 (Oryza sativa), 3'ss of exon 3
----------------------------------------------------------------attgtacttgaaattttatttacaacagttctatttgaaatctgagaccaatttcaattaaacggaatgtgacattta---tatgtaaaaaattctactgcagGGCAAGCAAAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATC
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gtagtattcttctgttatttccgctatgagaccaccttacatgacttagaccaacaattaatgtggactgccgtaattaattctaatggagaaacaaacaaaaaaatgacagtttgttctgacaattttagtttatcccttaactcaggctacttatatggttgcagGGAAAACAAAGCATTTCACTAGAACCTGGCGGTCAGTTTGAACTTAGTGGTGCTCCTCTTGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaccaatttcaattaaacggaatgtgacatttatatgtaaaaaattctactgcagGGCAAGCAAAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATC
ttctact CT-rich tract
acatttatatgtaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attgtacttgaaattttatttacaacagttctatttgaaatctgagaccaatttcaattaaacggaatgtgacatttatatgtaaaaaattctactgcagGGCAAGCAAAGTATATCATTAGAACCTGGTGGTCAATTTGAGCTTAGTGGTATGCCTTTGAAAACATTGCATCAAACTTGTGATGAGATTAATTCACATC
- -gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat