1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttccctagttttttttttctctcttcaattatttcgaatttagggatttgaacaccaaaactcgtttcaatttgtgcagGAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAG
species | Glycine max |
transcript | GLYMA11G02560.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAGAGGCACCATGATTCCTTCGAGTTCGATGGCATCCAATATACTCTC GAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTEST: gi|7684946|gb|AW755594.1|AW755594
genomic: GGAAGAGGCACCATGATTCCTTCGAGTTCGATGGCATCCAATATACTCTCgtaagttccc ... atttgtgcagGAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTT
EST: GGAAGAGGCACCATGATTCCTTCGAGTTCGATGGCATCCAATATACTCTC GAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTEST: gi|209710880|gb|BW653641.1|BW653641
genomic: GGAAGAGGCACCATGATTCCTTCGAGTTCGATGGCATCCAATATACTCTCgtaagttccc ... atttgtgcagGAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTT
EST: GGAAGAGGCACCATGATTCCTTCGAGTTCGATGGCATCCAATATACTCTC GAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTT
genomic: GGAAGAGGCACCATGATTCCTTCGAGTTCGATGGCATCCAATATACTCTCgtaagttccc ... atttgtgcagGAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTT
tcaattatttcgaatttagggatttgaacaccaaaactcgtttcaatttgtgcagGAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAG
tttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttccctagttttttttttctctcttcaattatttcgaatttagggatttgaacaccaaaactcgtttcaatttgtgcagGAGGATCCCGTTCTTCTTGTACCCGAGGAGAAAGGCCAAAAGCCTTATGTTGCAATTATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA