1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtataccccacgttacaaagttcacttctttttctctcatcatttctgggtttctttccttttcctcattctagaagcatgcatggtcatggagtatcaaaatcatattgtccacaattagacatttagttcctgaataattaataagtcccaagttcaattcgactgctgattaacttgttataattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTGTGGGTGCCAGATTTGGCAGAGCTATTGTGTCCAAAGAGAAAAATGCAA
species | Glycine max |
transcript | GLYMA11G02540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCAAAAAG-CCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTEST: gi|192310356|gb|FK002236.1|FK002236
genomic: CCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: ACGACGGTTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTEST: gi|209716106|gb|BW668645.1|BW668645
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTEST: gi|254341536|gb|GR852673.1|GR852673
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTEST: gi|298185066|gb|HO030279.1|HO030279
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTEST: gi|208216069|gb|GE008977.1|GE008977
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: CCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTEST: gi|213597069|gb|DB968164.1|DB968164
genomic: CCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTEST: gi|193305542|gb|FK270003.1|FK270003
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: ACGACGATTCA-CTCCCAAAA-GCCCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTEST: gi|193395721|gb|FK364024.1|FK364024
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTT
EST: CGACGATTCAACTCCCAAAA-GCCCGGTTGACGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTEST: gi|298179000|gb|HO024735.1|HO024735
genomic: CGACGATTCAACTCCCAAAAAGCCCGGTTG-CGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTT
EST: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTEST: gi|213606574|gb|DB972509.1|DB972509
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
EST: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTG GTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
genomic: ACGACGATTCAACTCCCAAAAAGCCCGGTTGCGAGAACCAGTTCGTTCTGgtatacccca ... taattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGT
aattaataagtcccaagttcaattcgactgctgattaacttgttataattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTGTGGGTGCCAGATTTGGCAGAGCTATTGTGTCCAAAGAGAAAAATGCAA
gattaac putative branch site (score: 2)
attaacttgttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataccccacgttacaaagttcacttctttttctctcatcatttctgggtttctttccttttcctcattctagaagcatgcatggtcatggagtatcaaaatcatattgtccacaattagacatttagttcctgaataattaataagtcccaagttcaattcgactgctgattaacttgttataattgtcagGTAAAAGTGCAAACTTGGGTCAATGGTGTCGAGGATGTTGAATTTGTTGGTGTGGGTGCCAGATTTGGCAGAGCTATTGTGTCCAAAGAGAAAAATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA