1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcctcccttcgccctttaccttatatctcccttgaataaggtttttttattgttgttgttttttcaagttagttatgtttgaattgttgggttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACAAGAGCGCTGTTCTACATTGTGATGCAGTGTCTTGGAGC
species | Glycine max |
transcript | GLYMA11G02530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|298180878|gb|HO022317.1|HO022317
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTCGGTGGCATGATCTTTGCCCTCGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATTCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|298199215|gb|HO042578.1|HO042578
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTCGGTGGCATGATCTTTGCCCTCGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|7795617|gb|AW781014.1|AW781014
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TT-CGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCCGCAGTGACCTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|151402404|gb|EV272217.1|EV272217
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|192325960|gb|FK016637.1|FK016637
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|192317536|gb|FK011298.1|FK011298
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|193677575|gb|FK616177.1|FK616177
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: CCCTCGTCGACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|37995136|gb|CF806725.1|CF806725
genomic: CCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTCGGTGGCATGATCTTTGCCCTCGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|18041467|gb|BM309761.1|BM309761
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
genomic: TTTCGGTGGCATGATCTTTGCCCTCGTCGACTGCACTGCTGGAATATCAGgtttacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
tttattgttgttgttttttcaagttagttatgtttgaattgttgggttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACAAGAGCGCTGTTCTACATTGTGATGCAGTGTCTTGGAGC
ttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctcccttcgccctttaccttatatctcccttgaataaggtttttttattgttgttgttttttcaagttagttatgtttgaattgttgggttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACAAGAGCGCTGTTCTACATTGTGATGCAGTGTCTTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG