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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcatcacttcaattccacaactcttcctcttcgatgcagatatcagatcaataacctgctccacttaatttcacagctctgaatgtgtgatatttttacagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGACGGGAAATTGTGGATGGGAAG

Basic information

species Glycine max
transcript GLYMA11G02030.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305656|gb|FG998356.1|FG998356
EST:     GGATTCCCTGCTCCCATTCAAGGTCTCGATTGTTGCTGGGACGTTTTTCG                         ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGACGGGAAAT
genomic: GGATTCCCTGCTCCCATTCAAGGTCTCGATTGTTGCTGGGACGTTTTTCGgttagttcat ... atttttacagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGACGGGAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaataacctgctccacttaatttcacagctctgaatgtgtgatatttttacagATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGACGGGAAATTGTGGATGGGAAG
                                            tattttt  CT-rich tract
                                         tgatattttta  TA-rich tract