1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtggttattccgctctttattctccccccttcgttttcaatttcgcttttgttttcgtgtaatctagggtttcgcattccaaggtttccatgctaggttttctcgaaaggagcctatagcttatccacatgcttatgatttagtttttcttttttatttattaattttggcctctgtgttgtattttagGAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAG
species | Glycine max |
transcript | GLYMA11G01960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATA GEST: gi|192295390|gb|FG987004.1|FG987004
genomic: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATAgtggttattc ... tgtattttag-
EST: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATA GEST: gi|192295390|gb|FG987004.1|FG987004
genomic: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATAgtggttattc ... tgtattttag-
EST: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATA GEST: gi|192295390|gb|FG987004.1|FG987004
genomic: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATAgtggttattc ... tgtattttag-
EST: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATA GEST: gi|20812619|gb|BQ297097.1|BQ297097
genomic: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATAgtggttattc ... tgtattttag-
EST: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAA-TT--TG----- GAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAAT
genomic: TCCAGCATTCACTCCGCTAGCGTCTTTCACTCATAAAATTTGGTGAAATAgtggttattc ... tgtattttagGAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAAT
atgatttagtttttcttttttatttattaattttggcctctgtgttgtattttagGAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAG
tattaat putative branch site (score: 2)
ttagtttttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttattccgctctttattctccccccttcgttttcaatttcgcttttgttttcgtgtaatctagggtttcgcattccaaggtttccatgctaggttttctcgaaaggagcctatagcttatccacatgcttatgatttagtttttcttttttatttattaattttggcctctgtgttgtattttagGAACGTTTCGTGAAACTCCCAAACCAGAAGCCGAAGTTTCCAAGTGAAAATGGACGGTACGTTTGACGATGAAGCTGAACCGGCCGTTACAATCCGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA