1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaactctctctctctctgagattggaagcattgccatcaattcaattaattatcttaaacttattttcatccacttcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCACGTCATCCACAGCCATTGAACCCGCATTGAAGGAGGCTTTTTCCAGATA
species | Glycine max |
transcript | GLYMA11G01340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA TTGCAGGGACCAACATTCAGAGCTCCGCAAAGAGGGCAAGAACCATGGCCAEST: gi|17519493|gb|BM188535.1|BM188535
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA TTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCAEST: gi|213593699|gb|DB971721.1|DB971721
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: ATGGCATCCAAACATCGAA TTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCAEST: gi|192326479|gb|FK017256.1|FK017256
genomic: ATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA TTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCAEST: gi|298182210|gb|HO026385.1|HO026385
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA TTGCAGGGACCAACATTCAGAGCTCCGCAAAGAGGGCAAGAACCATGGCCAEST: gi|298174665|gb|HO014696.1|HO014696
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
EST: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAA TTGCAGGGACCAACATTCAGAGCTCCGCAAAGAGGGCAAGAACCATGGCCG
genomic: GATGTTGCACAGTTTAAGGTTTTCTCTATTCATGGCATCCAAACATCGAAgtaactctct ... tcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCA
ttgccatcaattcaattaattatcttaaacttattttcatccacttcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCACGTCATCCACAGCCATTGAACCCGCATTGAAGGAGGCTTTTTCCAGATA
aattaat putative branch site (score: 3)
ttttcatccacttc putative PPT
atcaattcaattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactctctctctctctgagattggaagcattgccatcaattcaattaattatcttaaacttattttcatccacttcgataacagTTGCAGGGACCAACATTCAGAGCTCCCCAAAGAGGGCAAGAACCATGGCCACGTCATCCACAGCCATTGAACCCGCATTGAAGGAGGCTTTTTCCAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG