Sequence
atgc intronic sequence ATGC exonic sequencegtaacatttctactttttctatttttcttttctcccaattactattttcttatttattgtgtggaggcagGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGTGCTTCTGCTGTTCTTGTTGCCGATGATGTTGAGGAGCCCTTAATTACTATGGACAC
Basic information
species | Glycine max |
transcript | GLYMA11G00370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G00370.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G14740.2 (Arabidopsis thaliana), 3'ss of exon 1
-----------------------gtaacatttctacttt-ttctatttttcttttctcccaattactattttcttatttattgtgtggaggcagGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGTGCTTCTGCTGTTCTTGTTGCCGATGATGTTGAGGAGCCCTTAATTACTATGGACAC
| ||| | | ||| ||| | | || | | || | | || |||| | || ||| ||||| ||||||||||| ||||| || ||||| || |||||||||||||||||||| || ||| ||||||| || || || ||||| ||||| ||
gtacttcaatctcttactcaatcgatttgattcgattcgattcgattccttagggtttataagtgttgttgttgttgttgttgttgttgtgtagATTGTTTCTTCGCTTTGAAGGTATGGAACGCACAGAAAGCAGGTGCTTCTGCTGTTCTTGTAGCTGATAATGTTGATGAACCTTTGATTACAATGGATAC
upper sequence: GLYMA11G00370.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G14720.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaacatttctactttttctatt--tttcttttctcccaattact----attttcttatttat---tgtgtggaggcagGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGTGCTTCTGCTGTTCTTGTTGCCGATGATGTTGAGGAGCCCTTAATTACTATGGACAC
||| | || ||| || |||| || | ||| || |||| || || | ||| | || ||| ||||| ||||||||||| ||||| || ||||| || |||||||||||||||||||| || ||| ||||||| ||||| || ||||| ||||| ||
gtactttcatcttttcttcaatcgatttcgttagattcgattccttagggtttttatacttgtggttgttattgtgtagATTGTTTCTTCGCTTTGAAGGTATGGAACGCACAGAAAGCAGGTGCTTCTGCTGTTCTTGTAGCTGATAATGTTGATGAGCCTTTGATTACAATGGATAC
upper sequence: GLYMA11G00370.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 3'ss of exon 1
------------------gtaacatttctactttttctatttttcttttctcccaattactattttctta------tttattgtgtggag------gcagGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGTGCTTCTGCTGTTCTTGTTGCCGATGATGTTGAGGAGCCCTTAATTACTATGGACAC
| | | || ||| | || || | | ||| || | | | || |||| |||||| ||||| || ||||| |||||||||||||| || ||||||||||| || |||||||| ||| | ||||||| || | || || |||||| |
gttggtctcctgtgatagtctaagccttcatcttatctgtcattgccacacaacaggaggaacccttttaacagatttaaatatttgtctttctttgcagATTGCTTTTTTGCGTTAAAGGTTTGGAATGCCCAGAATGCAGGTGCTTCTGCAGTGCTTGTTGCAGATAACATTGAGGAACCACTGATAACCATGGACTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctatttttcttttctcccaattactattttcttatttattgtgtggaggcagGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGTGCTTCTGCTGTTCTTGTTGCCGATGATGTTGAGGAGCCCTTAATTACTATGGACAC
aattactattttctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacatttctactttttctatttttcttttctcccaattactattttcttatttattgtgtggaggcagGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGTGCTTCTGCTGTTCTTGTTGCCGATGATGTTGAGGAGCCCTTAATTACTATGGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG