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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctactatctaggcttagggtttcttctctcccactctcttccaatcctcttatccccttcctttctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTCACCACCGCCGCCGCCGCCAATTTCACACGTGGC

Basic information

species Glycine max
transcript GLYMA10G44200.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44200.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g48930.1 (Oryza sativa), 3'ss of exon 1
---------------------------------------------------------------------------------------------gtatctactatctag---gcttagggtttcttctctcccactctcttccaatcctcttatccccttcctttctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTCACCACCGCCGCCGCCGCCAATTTCACACGTGGC
                                                                                             |   |  | |||| |   | ||| ||       |       |       | | |  ||       | | |    |   ||||| || ||||| |||| ||| ||||| ||  ||  | ||||||||||||| |||  |||||| |||| |||||||||| ||||||||||||| || |||
gtaagaccccgccgccgcccccccctcctctcgatcctcgcgttcgatccgtccgccggttttgttttttagggtttggaattgcagcgatctggtcccccgatctggtttggttatggaaggggatgggtttttggtccttattgcggttggtgtgcttcgtgtgttcgcagGGTGCAGTTCACCGAGTTCATCCAGAAGAATCTCCACCTGTATCAGTTCCGCAACAACATCCCGCTCAGCACCGCCGCCACCGCCAATTTCACCCGCGGC

upper sequence: GLYMA10G44200.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G097164_T02 (Zea mays), 3'ss of exon 1
-----------------------------------------------------------------------gtatctac-tatc-taggcttagggtttcttctctcccactctcttccaatcctc-ttatccccttcctttctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTCACCACCGCCGCCGCCGCCAATTTCACACGTGGC
                                                                       || | |   | || |  | |  |   |   |||  |    | |||     | ||  ||    || |   |  |     ||||| ||||| || |||| ||| ||||| ||| ||  | |||| |||||||| |||  |||||| ||| | ||||||||||||||||| |||||||| |||
gtaggttctctgccctcgccgatccgttcgttcaaaggccggcctatcgattccacgttcgctttttttgggtttttgtgtgtcgtgcgatctgatctcgatctgcctgggtttctgggggttctgattggggccgtttctgttggcgcagGGTGCAATTTACGGAGTTCATACAGAAGAACCTCCACCTGTACCAGTTCCGGAACACCATCCCGCTCTCAACCGCCGCCGCCGCCAACTTCACACGCGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165981|gb|HO008952.1|HO008952
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|192316571|gb|FK006806.1|FK006806
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|16996276|gb|BM085648.1|BM085648
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|151404631|gb|EV274445.1|EV274445
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|254343357|gb|GR857061.1|GR857061
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|151410177|gb|EV279992.1|EV279992
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|151394691|gb|EV264562.1|EV264562
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|151395540|gb|EV265417.1|EV265417
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACGTTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|298176467|gb|HO026702.1|HO026702
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|192331010|gb|FK021695.1|FK021695
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTCCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|254343358|gb|GR857062.1|GR857062
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAG-CCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|298188127|gb|HO032084.1|HO032084
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|17022556|gb|BM093590.1|BM093590
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|298193498|gb|HO034104.1|HO034104
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|14258862|gb|BG881770.1|BG881770
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|17518960|gb|BM188002.1|BM188002
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|16996234|gb|BM085606.1|BM085606
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|10236935|gb|BE805823.1|BE805823
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|21594680|gb|BQ610231.1|BQ610231
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|209712841|gb|BW684196.1|BW684196
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGGAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|18039162|gb|BM307456.1|BM307456
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|254340001|gb|GR858126.1|GR858126
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|7458598|gb|AW666048.1|AW666048
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|11689819|gb|BF597495.1|BF597495
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTG-GATCCATTCAGAAAAAC
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAG-TACATTCAGAAAAAC
EST: gi|14126180|gb|BG790618.1|BG790618
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|11689817|gb|BF597493.1|BF597493
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACCGTCGGCTTGTATCAGTTCC
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAA-CGTCGCCTTGTATCAGTTCC
EST: gi|192316570|gb|FK006805.1|FK006805
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|13181090|gb|BG352430.1|BG352430
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|254335139|gb|GR844924.1|GR844924
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|298175749|gb|HO018346.1|HO018346
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|6455279|gb|AW185962.1|AW185962
EST:     TTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCC
genomic: TTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCC-GGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCC
EST: gi|151394221|gb|EV264092.1|EV264092
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|192325505|gb|FK017231.1|FK017231
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|208142407|gb|GD935405.1|GD935405
EST:     CTTCTCGATTCCCACAAACTCATCGCCGTTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|254340002|gb|GR858127.1|GR858127
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|16347200|gb|BI972795.1|BI972795
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
EST: gi|254335140|gb|GR844925.1|GR844925
EST:     CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAG                         GGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG
genomic: CTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctacta ... tctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttctctcccactctcttccaatcctcttatccccttcctttctcttttagGGTTCAATTCACTGAGTACATTCAGAAAAACGTCGCCTTGTATCAGTTCCGTAACGGCATCCCTCTCACCACCGCCGCCGCCGCCAATTTCACACGTGGC
               ctctcttccaatcctc  CT-rich tract
                                               tctttta  TA-rich tract