1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaatagacagcttgcttttttctccgattcaatttgccgctgctctacatgtgttctttgaataaatctttgctaattgtgttctttcccttctctccagTCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTTGCTGATGATTGCGTTCCAAGGTGGCTTACTGCATCATACCACATAGATT
species | Glycine max |
transcript | GLYMA10G43750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCATTCATGCGTATCGTGATCGGATTTATGTTGGTGATGTCCAAGAG TCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTTEST: gi|208023555|gb|GD821226.1|GD821226
genomic: TCTCCATTCATGCGTATCGTGATCGGATTTATGTTGGTGATGTCCAAGAGgtatgtttct ... ttctctccagTCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTT
EST: TCTCCATTCATGCGTATCGTGATCGGATTTATGTTGGTGATGTCCAAGAG TCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTTEST: gi|208115930|gb|GD909033.1|GD909033
genomic: TCTCCATTCATGCGTATCGTGATCGGATTTATGTTGGTGATGTCCAAGAGgtatgtttct ... ttctctccagTCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTT
EST: TCTCCATTCATGCGTATCGTGATCGGATTTATGTTGGTGATGTCCAAGAG TCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACC
genomic: TCTCCATTCATGCGTATCGTGATCGGATTTATGTTGGTGATGTCCAAGAGgtatgtttct ... ttctctccagTCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACC
tacatgtgttctttgaataaatctttgctaattgtgttctttcccttctctccagTCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTTGCTGATGATTGCGTTCCAAGGTGGCTTACTGCATCATACCACATAGATT
tgctaat putative branch site (score: 2)
ttgtgttctttccctt CT-rich tract
tttgaataaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatagacagcttgcttttttctccgattcaatttgccgctgctctacatgtgttctttgaataaatctttgctaattgtgttctttcccttctctccagTCTTTCCATTATTGCAAGTATAGGCGTGATGAAAACCAACTTTACATATTTGCTGATGATTGCGTTCCAAGGTGGCTTACTGCATCATACCACATAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -gcttgct
- - - - - - - - - - - - - - - - - - ccgctgc
- - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc