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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaccccaactctctcaaatcaatcattgggagtgtacttatagtgtcttaatgccaaaagttttagtctttggaaatgaatttggagtttctaaattgggttgttttgttgtgacagAGTGCTGCTCGGAGTGGCGGAGGAGAAGGCGTGACGGCGGAGCAGTCGCGACGGTGGCACGACGTGTTCTGGTTAGGAATATTCTTAATCCATTTGATAG

Basic information

species Glycine max
transcript GLYMA10G42290.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtctttggaaatgaatttggagtttctaaattgggttgttttgttgtgacagAGTGCTGCTCGGAGTGGCGGAGGAGAAGGCGTGACGGCGGAGCAGTCGCGACGGTGGCACGACGTGTTCTGGTTAGGAATATTCTTAATCCATTTGATAG
                          ttctaaa  putative branch site (score: 2)
                                         ttttgtt  putative PPT
           aaatgaattt  TA-rich tract