1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtttgtatactaataattgtacttctattttctcattaatttttgaattgtggttgtgtttgttcttttaacgatttgattaatgtgctgattctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAATAGCAGTGCTTATAGATGAGTTGAAAAATGATGACATCCAGCTGCGGT
species | Glycine max |
transcript | GLYMA10G42250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACG AAGTATTGGGAAEST: gi|213610725|gb|DB961200.1|DB961200
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAA
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAGACTTTCGCGCGACACG AAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAEST: gi|193391204|gb|FK357293.1|FK357293
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCA
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACG AAGTATTGGGAAEST: gi|254336134|gb|GR841459.1|GR841459
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAA
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACG AAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAEST: gi|209719391|gb|BW674471.1|BW674471
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCA
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACG AAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAEST: gi|254343717|gb|GR857473.1|GR857473
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCA
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACG AAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAEST: gi|16996777|gb|BM086149.1|BM086149
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCA
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACG AAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAEST: gi|23725947|gb|BU760948.1|BU760948
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCA
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACG AAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAEST: gi|18040749|gb|BM309043.1|BM309043
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCA
EST: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACG AAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCA
genomic: GTTTCGGTGGCTCGTGAAATCGAAAGTTATCGAAACTTTCGCGCGACACGgtacagtatt ... attctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCA
aattgtggttgtgtttgttcttttaacgatttgattaatgtgctgattctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAATAGCAGTGCTTATAGATGAGTTGAAAAATGATGACATCCAGCTGCGGT
ttctgcc CT-rich tract
atttgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatactaataattgtacttctattttctcattaatttttgaattgtggttgtgtttgttcttttaacgatttgattaatgtgctgattctgccagAAGTATTGGGAACCAAGCAAAATTTCTATGGCTGACGAACCACTATATCCAATAGCAGTGCTTATAGATGAGTTGAAAAATGATGACATCCAGCTGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctg