1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtcaagtggatttcgtgatctgtttctgccatcctctggttttcctgaacttcaataatcagtctgttacatttgttgtaattgctgctattcttttcagGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATG
species | Glycine max |
transcript | GLYMA10G42180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACG GTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATEST: gi|192297148|gb|FG988244.1|FG988244
genomic: AGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGgtttggccct ... ttcttttcagGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
EST: AGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACG GTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATEST: gi|26056311|gb|CA799225.1|CA799225
genomic: AGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGgtttggccct ... ttcttttcagGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
EST: AGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACG GTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATEST: gi|298187376|gb|HO034525.1|HO034525
genomic: AGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGgtttggccct ... ttcttttcagGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
EST: AGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACG GTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
genomic: AGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGgtttggccct ... ttcttttcagGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
tgaacttcaataatcagtctgttacatttgttgtaattgctgctattcttttcagGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATG
ctgctattcttttc CT-rich tract
ttcaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaagtggatttcgtgatctgtttctgccatcctctggttttcctgaacttcaataatcagtctgttacatttgttgtaattgctgctattcttttcagGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- caagtgg
- - - - - - - - - -ctgtttc
- - - - - - - - - - - - - tgccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc