1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtatccctaagcatagcatggcgtttctcaattcaacaatctatcaatctttctatcttcggattctctcattggattgtttacatttccttcattccttcattatattgattgcatgtgttctctgtgattcttccatgattgtgtcttagGCCGGTGTTATTGATGGATGCAGCCGAGCGGTTGGAAATCTTCTTTACACG
species | Glycine max |
transcript | GLYMA10G41920.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAG GCCGGTGTTATTGATGGATGCAEST: gi|193531992|gb|FK488858.1|FK488858
genomic: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAGgtatccctaa ... tgtgtcttagGCCGGTGTTATTGATGGATGCA
EST: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAG GCCGGTGTTATTGATGGATGCAEST: gi|208190569|gb|GD992729.1|GD992729
genomic: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAGgtatccctaa ... tgtgtcttagGCCGGTGTTATTGATGGATGCA
EST: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAG GCCGGTGTTATTGATGGATGCAGCCGAGCGGTTGGAAATCTTCTTTACACGEST: gi|193707459|gb|FK647185.1|FK647185
genomic: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAGgtatccctaa ... tgtgtcttagGCCGGTGTTATTGATGGATGCAGCCGAGCGGTTGGAAATCTTCTTTACACG
EST: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAG GCCGGTGTTATTGATGGATGCAEST: gi|193637598|gb|FK584509.1|FK584509
genomic: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAGgtatccctaa ... tgtgtcttagGCCGGTGTTATTGATGGATGCA
EST: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAG GCCGGTGTTATTGATGGATGCA
genomic: CCGTCGCAAACAACAAAGTCACCGCCAATCTTACTGCAGTCATCTACGAGgtatccctaa ... tgtgtcttagGCCGGTGTTATTGATGGATGCA
cttcattatattgattgcatgtgttctctgtgattcttccatgattgtgtcttagGCCGGTGTTATTGATGGATGCAGCCGAGCGGTTGGAAATCTTCTTTACACG
tattgat putative branch site (score: 3)
ttatattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccctaagcatagcatggcgtttctcaattcaacaatctatcaatctttctatcttcggattctctcattggattgtttacatttccttcattccttcattatattgattgcatgtgttctctgtgattcttccatgattgtgtcttagGCCGGTGTTATTGATGGATGCAGCCGAGCGGTTGGAAATCTTCTTTACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA