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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttgattttttcattcgaatctcacctatttatattttctctttataatttcgttacgttttcttaggatacaatgtttgtttcgtagGCACCTCCGAGGAATCATCCTCTGTTGCTATTATCTGGAGTGGGAACTAACGCCATTGGATATGACCTTTCCCCTGAG

Basic information

species Glycine max
transcript GLYMA10G41630.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41630.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G15060.1 (Arabidopsis thaliana), 3'ss of exon 1
gttagttttgattttttcattcgaatctcacc-tatttatattttctctttataatttcgttacgttttcttaggatacaatgtttgtttcgtagGCACCTCCGAGGAATCATCCTCTGTTGCTATTATCTGGAGTGGGAACTAACGCCATTGGATATGACCTTTCCCCTGAG
|||  ||   ||||   || ||   | || |  ||| |  | |||   ||    ||||  ||  ||  ||  || ||    | | | | || ||||| ||  |||||||||||||  |||| || || |||||||| |||||||| ||||| ||||||||  | || ||||  
gtt--ttcgaatttcaacaatcacctttctctgtatctgcaatttggattatatatttttttttgtgatca-agaattttctctct-tctcttagGCTCCGACGAGGAATCATCCATTGTTACTGTTGTCTGGAGTAGGAACTAATGCCATCGGATATGATTTATCTCCTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttctctttataatttcgttacgttttcttaggatacaatgtttgtttcgtagGCACCTCCGAGGAATCATCCTCTGTTGCTATTATCTGGAGTGGGAACTAACGCCATTGGATATGACCTTTCCCCTGAG
                                           tttgtttc  CT-rich tract
        tttataatttcgtta  TA-rich tract