Sequence
atgc intronic sequence ATGC exonic sequence...ggctttacgcttccagagttccagtatatcaatgcatatactaaatttcaatttttttagttatgtttggtaatgtttaaaatttgttgttattgattagATTGATGATGCAGAGAAGTTGTTGGAGATCACAAAGCAAGCAGCGAAGGAAGGTGCTTTCTTTGTGTATACTTTAGCTGACCCATCATTGGCTTCAGCTG
Basic information
species | Glycine max |
transcript | GLYMA10G39830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G39830.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0116g00390.t01 (Vitis vinifera), 3'ss of exon 1
---ggctttacgcttccagagtt-ccagtatatcaatgcatatactaaatttcaatttttttagttatgtttggtaatgtttaaaatttgttgttattgattagATTGATGATGCAGAGAAGTTGTTGGAGATCACAAAGCAAGCAGCGAAGGAAGGTGCTTTCTTTGTGTATACTTTAGCTGACCCATCATTGGCTTCAGCTG
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attggattctgttgtatagagctgccggagttttggtcttagaact---cttgcattaaaatggatg-atttgagtatatttgatggtcatctatgcttgttagATTGATGATGCAGAGCCGTTGGTGGAGATAGTAAAGCAAGCAGCTAAAGAAGGTGCAATGCTTGTTTACACTTTAGCTGACCCTTCAATGGCTGAATCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298172944|gb|HO019928.1|HO019928EST: ACTGCTTGGTCGACCGTGGCTGCCCCGTCAGTACCCATTTGTTTTCTGGG ATTGATGATGCAGAGAAGTTGTTGGAGATCACAAAGCAAGCAGCGAAGGAA
genomic: ACTGCTTGGTCGACCGTGGCTGCCCCGTCAGTACCCATTTGTTTTCTGGGgtaagcaaat ... tattgattagATTGATGATGCAGAGAAGTTGTTGGAGATCACAAAGCAAGCAGCGAAGGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcaatttttttagttatgtttggtaatgtttaaaatttgttgttattgattagATTGATGATGCAGAGAAGTTGTTGGAGATCACAAAGCAAGCAGCGAAGGAAGGTGCTTTCTTTGTGTATACTTTAGCTGACCCATCATTGGCTTCAGCTG
atttttttagttatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggctttacgcttccagagttccagtatatcaatgcatatactaaatttcaatttttttagttatgtttggtaatgtttaaaatttgttgttattgattagATTGATGATGCAGAGAAGTTGTTGGAGATCACAAAGCAAGCAGCGAAGGAAGGTGCTTTCTTTGTGTATACTTTAGCTGACCCATCATTGGCTTCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - -cgcttcc
- - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtttg