Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23056537|gb|BU577742.1|BU577742EST: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATG GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGGTCATTTG
genomic: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATGgtatgcagtt ... atatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST:
gi|151398286|gb|EV267870.1|EV267870EST: TGATTGTCACCGGCATGGAGGTGGCAGAA-TTGATGGCTCCCCAAGGATG GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAG
genomic: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATGgtatgcagtt ... atatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAG
EST:
gi|17400146|gb|BM176928.1|BM176928EST: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATG GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAACGCAGCTCATTTG
genomic: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATGgtatgcagtt ... atatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST:
gi|8669127|gb|BE190234.1|BE190234EST: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATG GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATGgtatgcagtt ... atatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST:
gi|209699438|gb|BW667622.1|BW667622EST: TGATTGTCACCGTCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATG GGTCCGACGTTTGNNGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATGgtatgcagtt ... atatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST:
gi|7796315|gb|AW781712.1|AW781712EST: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATG GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATGgtatgcagtt ... atatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
EST:
gi|7796065|gb|AW781462.1|AW781462EST: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATG GGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
genomic: TGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATGgtatgcagtt ... atatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacaagatttgtctacataaaacattttcaataatattgttggtgatatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCGTTGGGGAGGAACAATGCAATTGATGGAACGTGTGGAG
tacataaaacattttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcagtttctattctaatcttggtcctaattacttaagtatattattattattcacaagatttgtctacataaaacattttcaataatattgttggtgatatatgcagGGTCCGACGTTTGGGGCGATGATGATATCAGGGCAGAAGGCGGCTCATTTGGCGTTGAAGGCGTTGGGGAGGAACAATGCAATTGATGGAACGTGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG