1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgttaaagtgaaaaaagttttaaaaaaaagttttacgtgtcattcatgtgttacttacatgcaagaataacttattcttctatctttggtgcggttgcagTATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAG
species | Glycine max |
transcript | GLYMA10G39440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATGAAGAAGAGATTGAAGAGGACTTAAGATGGTGCTTTGCTCTCAATAG TATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATACEST: gi|151411311|gb|EV281122.1|EV281122
genomic: TATGAAGAAGAGATTGAAGAGGACTTAAGATGGTGCTTTGCTCTCAATAGgtacatatat ... gcggttgcagTATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATAC
EST: TATGAAGAAGAGATTGAAGAGGACTTAAGATGGTGCTTTGCTCTCAATAG TATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATAC
genomic: TATGAAGAAGAGATTGAAGAGGACTTAAGATGGTGCTTTGCTCTCAATAGgtacatatat ... gcggttgcagTATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATAC
atgtgttacttacatgcaagaataacttattcttctatctttggtgcggttgcagTATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAG
aagaataacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttaaagtgaaaaaagttttaaaaaaaagttttacgtgtcattcatgtgttacttacatgcaagaataacttattcttctatctttggtgcggttgcagTATATTGCATACAGGAGCTAGCCAGTACCAGGACATTGCATTGTTGGATACAAAGCCCTTTGGAAAG
- - - - -gaaaaaa
- - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca