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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctctctctttgaattttcggatcaaattctttatttttacttaatctatttattttaattttttttttgttttttgaaaattagATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGT

Basic information

species Glycine max
transcript GLYMA10G38870.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209721201|gb|BW665732.1|BW665732
EST:     ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAAT                         ATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
genomic: ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAATgtctctctct ... tgaaaattagATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
EST: gi|209708409|gb|BW665384.1|BW665384
EST:     ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAAT                         ATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
genomic: ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAATgtctctctct ... tgaaaattagATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
EST: gi|213595749|gb|DB955925.1|DB955925
EST:     ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAAT                         ATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
genomic: ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAATgtctctctct ... tgaaaattagATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
EST: gi|209729619|gb|BW651907.1|BW651907
EST:     ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAAT                         ATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
genomic: ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAATgtctctctct ... tgaaaattagATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
EST: gi|213591651|gb|DB969751.1|DB969751
EST:     ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAAT                         ATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG
genomic: ATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCGGCTATCGTTAATgtctctctct ... tgaaaattagATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttttacttaatctatttattttaattttttttttgttttttgaaaattagATTTCTGGTACAGCTGATGGCGAAGCTTCGGGCGCTCAATTTATATTGCAGTACATGCCGAGTCGTGATAAGAATTGTTTCATCAATTATGT
                       ttttaat  putative branch site (score: 3)
                   tttattttaatttttt  CT-rich tract
     ttttacttaatctatt  TA-rich tract