1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagatgagagtgtgctggtagcattcctcatatatattttatcctccaattcgcactatttgtttggcaaattgtggcatgttattgtctttctttctagGAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTGATCAGGGTTTTGAGAGAACTGACTACCGTCCAAAGAAAAATTGCAGATT
species | Glycine max |
transcript | GLYMA10G38820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAG GAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTGEST: gi|193407646|gb|FK374464.1|FK374464
genomic: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAGgtaccatgct ... ttctttctagGAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTG
EST: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAG GAAGGACTTCAGAATTCATCCCCCACCAACTGGGGAAAAGGGTGAGGACTTEST: gi|193388133|gb|FK353858.1|FK353858
genomic: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAGgtaccatgct ... ttctttctagGAAGGACTTCAGAATTCATCCCCCAC-AACTGGGGAAAAGGGTGAGGACTT
EST: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAG GAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTGEST: gi|254320595|gb|GR827044.1|GR827044
genomic: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAGgtaccatgct ... ttctttctagGAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTG
EST: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAG GAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTGEST: gi|193301114|gb|FK265957.1|FK265957
genomic: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAGgtaccatgct ... ttctttctagGAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTG
EST: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAG GAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTGEST: gi|193376014|gb|FK339985.1|FK339985
genomic: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAGgtaccatgct ... ttctttctagGAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTG
EST: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAG GAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTG
genomic: TTTCAATTGCAGCCGATCTTGGTTTCTCCTTGTCCCCTCCCCCATCCCAGgtaccatgct ... ttctttctagGAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTG
ccaattcgcactatttgtttggcaaattgtggcatgttattgtctttctttctagGAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTGATCAGGGTTTTGAGAGAACTGACTACCGTCCAAAGAAAAATTGCAGATT
ttattgtctttctttc CT-rich tract
tatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatgagagtgtgctggtagcattcctcatatatattttatcctccaattcgcactatttgtttggcaaattgtggcatgttattgtctttctttctagGAAGGACTTCAGAATTCATCCCCCACAACTGGGGAAAAGGGTGAGGACTTGATCAGGGTTTTGAGAGAACTGACTACCGTCCAAAGAAAAATTGCAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - -gagtgtg
- - - - - - - - - - gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtt