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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtacgagtgattcttgatttattctatagtcatctttttttactgttttgttttgttcctttcttatggcttatacttttcttcttttggttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGGAACCATTGCCCCTGGCCTACCTTATGTTGAACAAACTATAACCAATGCT

Basic information

species Glycine max
transcript GLYMA10G38760.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G149952_T01 (Zea mays), 3'ss of exon 1
---tgtacgagtgattcttgatttattctatagtcatctttttttactgttttgttttgttcctttcttatggcttatacttttcttcttttggttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGGAACCATTGCCCCTGGCCTACCTTATGTTGAACAAACTATAACCAATGCT
   |  | || ||   ||     |    |  | | |         |  |||           |  |||||       || |  ||||   |   ||  | ||| |||||||| |||||||||  ||| |||||||||||||| || || ||||| || | ||| |||||  |||||||||||||  |  | || |||||||||
cttttcatgaatgtgcctgagcatgcagttcattaagaggaagggaaagttacaac--accacaatcttagcaaacctaatgatctttcctctctt-ctgcagCATTGAGATCTATAAGCATAATAAGGAAGAAAGAATAGCACGGACATGGGGGACAACTGCACCTGGATTACCTTATGTTGAGGAGGCAATTACCAATGCT

upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G43780.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------tgtacgagtgattcttgatttattctatagtcatctttttttactgttttgttttgttcctttcttatggcttatacttttcttcttttggttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGGAACCATTGCCCCTGGCCTACCTTATGTTGAACAAACTATAACCAATGCT
                     || |   |  ||  |  | |   |  |||   | | |  |||   |     |  | || |||| |  ||     |  ||   |   ||||  ||     ||||||||||||| |||||||| ||||||||| |||| ||  |||| ||||||||||  || | ||| || |||||||  ||| || | || ||||| |||
gtaagtctctcttcctaattctgcaattgaaatcatcaaatgtatgcataagaaacctaatttgtagaaaaatcatcttgctttatactgatgattggttgattgaatttgaata-----gTATTGAGATTTACAAGCATCCCAAAGAAGAACGAATCGCGAGAACATGGGGAACCACGGCTCGTGGGCTTCCTTATGCGGAAGAAGCAATCACCAAAGCT

upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G14680.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------------------------------------------------------------------------tgtacgagtgattcttgattt--attctatagtcatctttttttactgttttgttttgttcctttc--ttatggcttatacttttcttcttttggttattt-cagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGGAACCATTGCCCCTGGCCTACCTTATGTTGAACAAACTATAACCAATGCT
                                                                                           ||    |   | | |||||||  ||  |   || || ||| || |    |  | ||||          | |  |  || | |  | ||  | || || ||| |||||||||||||||||| ||||| ||||||||  |||||||  |||||||||| || | ||| || ||  | |||||||| ||| |  | ||||||||||||
gtaagtttctcttaggttggattaggatttgaggaataaagttttcatttttatcgttctgttactgttgttgaggaataaagttttgatttgaggaataaagttttgatttttatagttctgttatttttgttgaggaatcagatttgcatagagagatcactgaatagagtaatgtttgtgtgtttgttttcagTATTGAGATTTATAAACATCCGAAAGAAGAGCGAATAGCGAGAACTTGGGGTACGACTGCACCGGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCT

upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G22890.1 (Arabidopsis thaliana), 3'ss of exon 1
tgtacgagtgattcttgatttattctatagtcatcttttt-ttactgttttgttttgttcctttcttatggcttatacttttcttcttttg-gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGGAACCATTGCCCCTGGCCTACCTTATGTTGAACAAACTATAACCAATGCT
   |||| |     | || |   |||  | | |||||    |||   ||| | | | |   |   |  |  || | |  | | |  ||||  |||   ||||||||||||||||||||||||| || |||||||| |||||  |||| ||||| || |  || || ||  | ||||| || ||  |  | ||||| ||||||
-tcacgattagacttagactagatctg-attaatcttgagattagaatttggctatatgtgtaattggttactgaaatctgtttgtttttatgtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGGTACGACGGCTCCAGGTTTGCCTTACGTAGACGAGGCGATAACTAATGCT

upper sequence: GLYMA10G38760.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0020g04210.t01 (Vitis vinifera), 3'ss of exon 1
---tgtacgag-tgattcttgatttattctatagtcatctttttttactgttttgttttgttcctttcttatggcttatacttttcttcttttggttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGGAACCATTGCCCCTGGCCTACCTTATGTTGAACAAACTATAACCAATGCT
    |||| || |||    | || || | |    |  |    ||  ||| |||     || |  ||  | ||  |||||   ||  ||  |||||| |||||||||||||||| || ||||| |  ||||||||||| |||||| |||||||||| || | |||||||||  | || ||||| || ||| | ||||||||| ||
ttgcgtactaggtgaagaataatgtaattttggattgttccattcaactattta----tggtgattgttcatcccttattgattcattgatttggtaatttcagTATTGAGATCTACAAGCACCACAAAGAAGAAAGGATAGCCAGAACTTGGGGGACTACTGCCCCTGGTTTGCCGTATGTGGATCAAGCAATAACCAATTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331070|gb|GR842335.1|GR842335
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|10847621|gb|BF070273.1|BF070273
EST:     AAGGTTGCTCTTTTTGATTCCACGGGAGACCCCGTTGCAATTCTTACTAA                         TATTGAGATTTATAAGCGATCCTAAAGAAGAAAGAATAGCCCGAACTT
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGC-ATCCTAAAGAAGAAAGAATAGCCCGAACTT
EST: gi|7042637|gb|AW472531.1|AW472531
EST:     TCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: TCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|9986742|gb|BE660850.1|BE660850
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254323345|gb|GR835846.1|GR835846
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254347908|gb|GR854157.1|GR854157
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254335071|gb|GR844856.1|GR844856
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254337787|gb|GR849526.1|GR849526
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|15287771|gb|BI471662.1|BI471662
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCAT
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCAT
EST: gi|8670410|gb|BE191517.1|BE191517
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|8826110|gb|BE209902.1|BE209902
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|8283995|gb|BE021554.1|BE021554
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|192326995|gb|FK019242.1|FK019242
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|4397377|gb|AI496374.1|AI496374
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|15337214|gb|BI497870.1|BI497870
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254325527|gb|GR838408.1|GR838408
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254338226|gb|GR849751.1|GR849751
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|23734114|gb|BU765276.1|BU765276
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254343487|gb|GR857243.1|GR857243
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254325493|gb|GR838374.1|GR838374
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254331647|gb|GR846064.1|GR846064
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAG
EST: gi|151400252|gb|EV270066.1|EV270066
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGA-TAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|254327812|gb|GR834777.1|GR834777
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCT
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCT
EST: gi|4285393|gb|AI440900.1|AI440900
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|5057323|gb|AI735799.1|AI735799
EST:     TCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: TCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|9820783|gb|BE556293.1|BE556293
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|213600463|gb|DB955919.1|DB955919
EST:     AAGGTTGCTCTTTTTGATTCCNAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|9819653|gb|BE555166.1|BE555166
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACT
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACT
EST: gi|18692738|gb|BM521586.1|BM521586
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
EST: gi|26048213|gb|CA784763.1|CA784763
EST:     AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAA                         TATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG
genomic: AAGGTTGCTCTTTTTGATTCCAAGGGAGACCCCGTTGCAATTCTCAATAAgtaagacact ... gttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgttttgttcctttcttatggcttatacttttcttcttttggttatttcagTATTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGGAACCATTGCCCCTGGCCTACCTTATGTTGAACAAACTATAACCAATGCT
                               cttttcttcttttggt  CT-rich tract
                          ttatactttt  TA-rich tract