1 5' 3' | 2 5' 3' | 3 5' 3' |
...agaataacttattatacaattacaagttgatattcctagttgaattgtgctatcacttttaggaggtccctacatcttacgtacatttccctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
species | Glycine max |
transcript | GLYMA10G38070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|151405608|gb|EV275422.1|EV275422
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCCTACTAGTTCATGGGGGTGAAGEST: gi|15814604|gb|BI786879.1|BI786879
genomic: TTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|192319999|gb|FK013341.1|FK013341
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254337148|gb|GR849208.1|GR849208
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: GGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254345411|gb|GR855854.1|GR855854
genomic: GGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: AAGTCCCTCATC-TCAAC ATTCATCCCAGTTC-TA-TGTTATTGGCTTACTAGTTCATGAGGGGTGAAGEST: gi|18039057|gb|BM307351.1|BM307351
genomic: AAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCAT-CCAGTTCTTATTGTTATTGGCTTACTAGTTCATG-GGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254337147|gb|GR849207.1|GR849207
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|38192319|gb|CF921525.1|CF921525
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGAATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254326323|gb|GR840915.1|GR840915
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|9565402|gb|BE474911.1|BE474911
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|9264563|gb|BE352710.1|BE352710
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254342179|gb|GR853316.1|GR853316
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|151408871|gb|EV278679.1|EV278679
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254321911|gb|GR837325.1|GR837325
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|192322181|gb|FK014077.1|FK014077
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAGC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|151408369|gb|EV278177.1|EV278177
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGTTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|151410262|gb|EV280077.1|EV280077
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254347556|gb|GR853805.1|GR853805
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|21994923|gb|BQ786451.1|BQ786451
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|151410498|gb|EV280313.1|EV280313
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|19938509|gb|BQ081753.1|BQ081753
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|4302149|gb|AI443292.1|AI443292
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|6719741|gb|AW307388.1|AW307388
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254314236|gb|GR831865.1|GR831865
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|38192274|gb|CF921480.1|CF921480
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|209718252|gb|BW657857.1|BW657857
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254343339|gb|GR857043.1|GR857043
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|41145425|gb|CK605636.1|CK605636
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|192328409|gb|FK020120.1|FK020120
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|58025409|gb|CX712150.1|CX712150
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|21993945|gb|BQ785482.1|BQ785482
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|192327233|gb|FK019540.1|FK019540
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGAGGGTGAAGEST: gi|17401512|gb|BM178294.1|BM178294
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|21602820|gb|BQ613151.1|BQ613151
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|17519804|gb|BM188846.1|BM188846
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|16104949|gb|BI892689.1|BI892689
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|254345410|gb|GR855853.1|GR855853
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: GGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|192326101|gb|FK016943.1|FK016943
genomic: GGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTTTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|192322404|gb|FK014885.1|FK014885
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: GGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGAGGGTGAAGEST: gi|151399314|gb|EV269185.1|EV269185
genomic: GGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAGEST: gi|58015137|gb|CX701879.1|CX701879
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
EST: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAAC ATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
genomic: TCAGGGGTGGCTTGGCTTGGGATTCTGATAACAAGTCCCTCATCTTCAACgtattctctc ... ctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
tgtgctatcacttttaggaggtccctacatcttacgtacatttccctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
atcttac putative branch site (score: 3)
catttcccttt putative PPT
actttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaataacttattatacaattacaagttgatattcctagttgaattgtgctatcacttttaggaggtccctacatcttacgtacatttccctttgtacagATTCATCCAGTTCTTATTGTTATTGGCTTACTAGTTCATGGGGGTGAAG
-gaataac
- - - - - - - - - - - - - - - - - - - - - -attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctaca