1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaataatggcttcttctgttccttgcttgctttaatgctaaattgcaaatcattgttcaacgttaactagttattgcataaaccataaacgaaacgtttctgaagcgtgtttgtttctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGACATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGT
species | Glycine max |
transcript | GLYMA10G37840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTCACAGCACACTCCTCCCAGGGNTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|213618406|gb|DB961579.1|DB961579
genomic: CTCTTTCACAGCACACTCCTCCCAGGG-TTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|17021112|gb|BM092146.1|BM092146
genomic: TATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: ACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|120494562|gb|EH222729.1|EH222729
genomic: ACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|4287211|gb|AI441157.1|AI441157
genomic: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: GCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|42722526|gb|CK768425.1|CK768425
genomic: GCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: AGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|15663379|gb|BI700750.1|BI700750
genomic: AGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|21601409|gb|BQ611740.1|BQ611740
genomic: TCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|58022088|gb|CX708829.1|CX708829
genomic: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|151396437|gb|EV266314.1|EV266314
genomic: TCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: ACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGGCTGAACAAEST: gi|16342062|gb|BI967657.1|BI967657
genomic: ACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|151412115|gb|EV281927.1|EV281927
genomic: TTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|7232950|gb|AW568301.1|AW568301
genomic: TATTCTCTCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|7232862|gb|AW568214.1|AW568214
genomic: TCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|31474246|gb|CD416274.1|CD416274
genomic: TCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: CTCCACCAAGAG GGAAATGGCTCCCAAACCGCTTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|120531718|gb|EH259851.1|EH259851
genomic: CTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: CTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|21889217|gb|BQ742430.1|BQ742430
genomic: CTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: GGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|254341148|gb|GR854876.1|GR854876
genomic: GGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|24136180|gb|BU926690.1|BU926690
genomic: CTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|31456593|gb|CD398621.1|CD398621
genomic: TCTCTTTCACAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: CTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGTACAAEST: gi|58014661|gb|CX701403.1|CX701403
genomic: CTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: TCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAEST: gi|31311388|gb|CD396591.1|CD396591
genomic: TCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
EST: CAGCACACTCCTCCCAGGGTTTCTCCACCAAGAG GGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
genomic: CAGCACACTCCTCCCAGGGTTTCTCCACCAAGAGgtaataatgg ... tctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAA
ttattgcataaaccataaacgaaacgtttctgaagcgtgtttgtttctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGACATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGT
tttgtttct CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatggcttcttctgttccttgcttgctttaatgctaaattgcaaatcattgttcaacgttaactagttattgcataaaccataaacgaaacgtttctgaagcgtgtttgtttctgggacagGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGACATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA