1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctaactactaatatcctcatactccgttacttccttgtcttgattcatgccaattgccaaatcttgtactttgaaataactgctcttttccttgatcagGATGACTTCTTACCAAGGACAGCCACTCCATTGGAGGATATATTCAAATCTCTTTTCTG
species | Glycine max |
transcript | GLYMA10G37820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tcatgccaattgccaaatcttgtactttgaaataactgctcttttccttgatcagGATGACTTCTTACCAAGGACAGCCACTCCATTGGAGGATATATTCAAATCTCTTTTCTG
aaataac putative branch site (score: 2)
ctgctcttttcctt CT-rich tract
tttgaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaactactaatatcctcatactccgttacttccttgtcttgattcatgccaattgccaaatcttgtactttgaaataactgctcttttccttgatcagGATGACTTCTTACCAAGGACAGCCACTCCATTGGAGGATATATTCAAATCTCTTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - catactc
- - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - catgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtac