1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacaaaacaatcaatgtctcgtggggattttgacttccatgtttgttgagctcattatagtcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTT
species | Glycine max |
transcript | GLYMA10G37690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATTCACATAG ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGEST: gi|151401377|gb|EV271191.1|EV271191
genomic: TATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
EST: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAG ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGEST: gi|192321001|gb|FK013503.1|FK013503
genomic: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
EST: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAG ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGEST: gi|13482016|gb|BG511359.1|BG511359
genomic: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
EST: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAG ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGEST: gi|151404534|gb|EV274348.1|EV274348
genomic: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
EST: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAG ATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
genomic: TTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGgtaacaaaac ... tcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGG
gtctcgtggggattttgacttccatgtttgttgagctcattatagtcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTT
ttttgac putative branch site (score: 3)
tcattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaaaacaatcaatgtctcgtggggattttgacttccatgtttgttgagctcattatagtcatttgcagATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT