1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacatcttaacctgtcttatttacattatatgtgtgaggatgtgctttcacagcttgtttgctgaaaacttactttttttgttatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTAGCAGTGTTGGATTGGGAAGGGGTGTTGGTGGATTGCCACATCATTCACTAACTGATCCTGCTG
species | Glycine max |
transcript | GLYMA10G37100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGCGCTGGG CTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTAGCAGTGTTGGATEST: gi|7233025|gb|AW568376.1|AW568376
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGCGCTGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTAGCAGTGTTGGAT
EST: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGCGCTGGG CTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTAGCAGTGTTGGATTG
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGCGCTGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTAGCAGTGTTGGATTG
ggatgtgctttcacagcttgtttgctgaaaacttactttttttgttatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTAGCAGTGTTGGATTGGGAAGGGGTGTTGGTGGATTGCCACATCATTCACTAACTGATCCTGCTG
aacttac putative branch site (score: 2)
cttactttttttgtt CT-rich tract
aaaacttacttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatcttaacctgtcttatttacattatatgtgtgaggatgtgctttcacagcttgtttgctgaaaacttactttttttgttatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTAGCAGTGTTGGATTGGGAAGGGGTGTTGGTGGATTGCCACATCATTCACTAACTGATCCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA