1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtatatatggctgaaacttattttataaagtgtatgcattttcagcttcattttttattttatagagaagttgtaagattagattctgttacattgcagATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATATTGCTCGAAATGATGACCACACCGGTCATCGAATGCTAAAGGACACTAA
species | Glycine max |
transcript | GLYMA10G37090.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATG ATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATAEST: gi|192297986|gb|FG993235.1|FG993235
genomic: GCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATGgttcgctatt ... tacattgcagATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATA
EST: GCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATG ATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATAEST: gi|22523059|gb|BU081870.1|BU081870
genomic: GCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATGgttcgctatt ... tacattgcagATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATA
EST: GCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATG ATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATAEST: gi|17020669|gb|BM091703.1|BM091703
genomic: GCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATGgttcgctatt ... tacattgcagATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATA
EST: GCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATG ATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATA
genomic: GCCGCTTCACCCTTCTTCCACCATGCTCAAACGACCTCGTACTGAATATGgttcgctatt ... tacattgcagATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATA
gcttcattttttattttatagagaagttgtaagattagattctgttacattgcagATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATATTGCTCGAAATGATGACCACACCGGTCATCGAATGCTAAAGGACACTAA
ttctgtt CT-rich tract
attttttattttatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtatatatggctgaaacttattttataaagtgtatgcattttcagcttcattttttattttatagagaagttgtaagattagattctgttacattgcagATATGTCACCTTCTGGTCTGACTTCAGGGGGTAATGAAATGCATAATTATATTGCTCGAAATGATGACCACACCGGTCATCGAATGCTAAAGGACACTAA
- - - - tggctga
- - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg