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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccactttgtgctttaccctatctgtcttccttctcttttgtttcttgatcactaagcattgaagatggaatttaaaataaagtttggtttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGTGGAACATTCATTCCTTTAGTGGCACTTTGGTTATATATTAAATTCTGGG

Basic information

species Glycine max
transcript GLYMA10G36940.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725896|gb|BW654733.1|BW654733
EST:     AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACG                         CTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
genomic: AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACGgttagtcagc ... ttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
EST: gi|193635992|gb|FK581229.1|FK581229
EST:     AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACG                         CTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAA
genomic: AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACGgttagtcagc ... ttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAA
EST: gi|7795239|gb|AW780636.1|AW780636
EST:     TAAAAACGTGTTATCTGACAAGACTTTGGAACATCACG                         CTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
genomic: TAAAAACGTGTTATCTGACAAGACTTTGGAACATCACGgttagtcagc ... ttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
EST: gi|213608767|gb|DB962861.1|DB962861
EST:     AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACG                         CTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
genomic: AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACGgttagtcagc ... ttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
EST: gi|254323676|gb|GR840317.1|GR840317
EST:     AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACG                         CTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
genomic: AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACGgttagtcagc ... ttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
EST: gi|213602197|gb|DB962690.1|DB962690
EST:     AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACG                         CTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
genomic: AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACGgttagtcagc ... ttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
EST: gi|14259158|gb|BG882066.1|BG882066
EST:     AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACG                         CTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT
genomic: AAGCACAGGATCTAAAAACGTGTTATCTGACAAGACTTTGGAACATCACGgttagtcagc ... ttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgatcactaagcattgaagatggaatttaaaataaagtttggtttatttgcagCTCCTCACTTTTCAAAGGTTTCAGTTGTGACATCCTCCAAGTGACAAGAGTGGAACATTCATTCCTTTAGTGGCACTTTGGTTATATATTAAATTCTGGG
 tcttgat  putative branch site (score: 4)
                                            tttattt  putative PPT
                         aatttaaaataaagtt  TA-rich tract