Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atattaacaacgatttctttcctcattttgtcgtgttaaaatttatcacctgtctctcgttttcattactgacgtttatttttattttttgtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG

Basic information

species Glycine max
transcript GLYMA10G36780.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os12g07010.1 (Oryza sativa), 3'ss of exon 1
---atattaacaacgatttctttcctcattttgtcgtgttaaaatttatcacctgtctctcgttttcattactgacgtttatttttattttttgtttttg---aagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
    |  |      | ||  |  |      |||   |     | ||||    |  | ||| | || |    || | |  | | | |   ||| ||||      ||||||||| | |||||| |||||||||||||||||||| ||||| || || || || || || || ||||||||  |  | || ||| | || || |
tcgctggtgctgtagtttgatcgctgtggcttgcgattggtgattttacgggcattttcttggttgcggatctcatggct-tgtgtgggtttcgtttgcagGTAAGGAGGAGGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCATGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGCGGCAAGG

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 1
------------------------------------------------------------------atattaacaacgatttctttcctcat-tttgtcgtgttaaaatttatcacctgt-ctctcgttttca--ttactgacgtttatttttatt-------ttttgtttttgaagGAGGAGAAG------GATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                                  || |      ||   ||   |  |   ||   ||        |||  | | | | || | ||  |     |  ||  ||||   |||  |       ||||||   | | ||||||| ||      |||||| |||||||||||||||||||| |||||||| || || || || || || ||||||||  |  | || ||| |        
gtaaccatctcatccttcgcctcccctcgattcgctgctcgcctgcggcggcggcgcggctaggccatttcgttgccggcgtcggcctgcgggttcaccggtgggtgctttgccgcgtttgcttttgtcgtggatctgatggagtttgcgttttctcgcgggattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCACGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGC-------

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G324314_T03 (Zea mays), 3'ss of exon 1
----------------------------------------------atattaa-caacgatttctttcctcattttgtcgtgttaaaatttatc---acctgtctctcgttttcattactgacgtttatttttattttttgtttttgaagGAGGAGA----AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                 ||   |  ||    |   | |   || | || |     | |   |         ||| ||  |    |  ||  | || || | || |  ||    | | | ||  ||    |||||||| ||| | |||||||||||||| |||||||| || || || || ||||||||||||||  |  | |||||| | ||     
gtaacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccggcggcggccttttcttcgccgcgcggcgagtcgcccatgttgagctcgcggctgatctgatgg-gcttgttgtgatctcctgcagGTAAGGAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGG-----

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G801409_T03 (Zea mays), 3'ss of exon 1
----------------------------------------------------atattaa-caacgatttctttcctcattttgtcgtgtta-aaatttatcacctgtctctcgttttcattactgacg--tttatttttattttttgtttttgaagGAGGAGA-------AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                       ||   |  ||    |   | |   || | || |     |      ||  |    |||||      | |||| |   || || | || |  ||    | | | ||  ||       |||||||| ||| | |||||||||||||| |||||||| || || || || ||||||||||||||  |  | |||||| |        
gtgaatgtaacgaatccgccgcgggcgtcatctcctcttcccacctcgactcgccttgctcgccggcggcggccttttcttcgccgagcggcgagccgcccatgttgagctcgtggctgat-ctgatgggcttgttgtgatctcctgcagATAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCG--------

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G132968_T01 (Zea mays), 3'ss of exon 1
------------------------------------------atattaacaacgatttctttcc--------tcattttgtcgtgttaaaatttatcacctgtctctcgttttcatta---ctgacg--tttatttttattttttgtttttgaagGAGGAGA-------AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                          |  |  ||     || ||  ||         ||||| ||||             | ||  | |   | |  | |     |||| |   || || | || |  ||    | | | ||  ||       |||||||| ||| | |||||||||||||| |||||||| || || || || ||||||||||||||  |  | || ||| |        
gtgaatataaggaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcgtcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCG--------

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G324314_T04 (Zea mays), 3'ss of exon 1
----------------------------------------------------atattaa-caacgatttctttcctcattttgtcgtgttaaaatttatc---acctgtctctcgttttcattactgacgtttatttttattttttgtttttgaagGAGGAGA----AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                       ||   |  ||    |   | |   || | || |     | |   |         ||| ||  |    |  ||  | || || | || |  ||    | | | ||  ||    |||||||| ||| | |||||||||||||| |||||||| || || || || ||||||||||||||  |  | |||||| | ||     
gtggatgtaacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccggcggcggccttttcttcgccgcgcggcgagtcgcccatgttgagctcgcggctgatctgatgg-gcttgttgtgatctcctgcagGTAAGGAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGG-----

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G109677_T04 (Zea mays), 3'ss of exon 3
------------------------------------------atattaacaacgatttctttcc--------tcattttgtcgtgttaaaatttatcacctgtctctcgttttcatta---ctgacg--tttatttttattttttgtttttgaagGAGGAGA-------AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                          |  |  ||     || ||  ||         ||||| ||||             | ||  | |   | |  |       |||| |   || || | || |  ||    | | | ||  ||       |||||||| ||| | |||||||||||||| |||||||| || || || || ||||||||||||||  |  | |||||| |        
gtgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttgctcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCG--------

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G135727_T04 (Zea mays), 3'ss of exon 1
--------------------------------------------------atattaacaacgatttctttcc----tcattttgtcgtgttaaaatttatcacctgtctctcgttttcatta---ctgacg--tttatttttattttttgtttttgaagGAGGAGA-------AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                    | |  |   | |  |  ||      ||||| ||||             | ||  | |   | |  |       |||| |   || || | || |  ||    | | | ||  ||       |||||||| ||| | |||||||||||||| |||||||| || || || || ||||||||||||||  |  | || ||| | || |   
gtgaatgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttggtcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcaggtaagGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCGCGGCA---

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G135727_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------atattaacaacgatttctttcc----tcattttgtcgtgttaaaatttatcacctgtctctcgttttcatta---ctgacg--tttatttttattttttgtttttgaagGAGGAGA-------AGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                                                    | |  |   | |  |  ||      ||||| ||||             | ||  | |   | |  |       |||| |   || || | || |  ||    | | | ||  ||       |||||||| ||| | |||||||||||||| |||||||| || || || || ||||||||||||||  |  | || ||| |        
gtgaatgaatataacgaatccgccgccggcgtcatctcctcctcccacctcgactcgccttggtcgccgtcggcggccatttcgtcgccgcgcggcgagccgcccatgttgagctcgcggcggatctgatgggcttgttgtgatctcctgcagGTAAGGAAGAGGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGCCACCG--------

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 1
atattaacaacgatttctttcctcattttgtcg-tgttaaaatttatcacctgtctctcgt--tttcattactgacgtttatttttattttttgtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
|    || || | |   | |     || ||    ||| | | |||  ||  |   | |     ||| |  | | |  ||| ||||||||      |  |||||||||||||| ||||| ||| ||||||| ||||| || ||||| ||||| || |||||| | || |||||||| ||||||||||| ||||||||||
aatggaaaaatgctaggtgttaaagttatgaaaatgtaatagttttccatgtaaatatgaacatttgaggattaatattt-tttttattccca--tggtgaagGAGGAGAAGAATGTCGCACCGGAAGTTTGAGCATCCCAGGCATGGTTCTCTTGGATTTTTGCCAAGGAAGCGGGCTGCTCGTCATAGGGGAAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718971|gb|BW674811.1|BW674811
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|14259532|gb|BG882440.1|BG882440
EST:     CTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: CTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209699676|gb|BW655742.1|BW655742
EST:     GTGCCTCCATTC-GGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|7042244|gb|AW472138.1|AW472138
EST:     GGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209717595|gb|BW671491.1|BW671491
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|120532147|gb|EH260280.1|EH260280
EST:     AGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAANGCACGGTTCACT
genomic: AGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|9564117|gb|BE473626.1|BE473626
EST:     TGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: TGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|16347833|gb|BI973428.1|BI973428
EST:     CGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: CGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209729583|gb|BW655159.1|BW655159
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|213595132|gb|DB972066.1|DB972066
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209700389|gb|BW660833.1|BW660833
EST:     GACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209711914|gb|BW678993.1|BW678993
EST:     GCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|213601307|gb|DB956559.1|DB956559
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|213603059|gb|DB960392.1|DB960392
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209705363|gb|BW668007.1|BW668007
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209706622|gb|BW676143.1|BW676143
EST:     CTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: CTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|213592538|gb|DB961798.1|DB961798
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|213616738|gb|DB971249.1|DB971249
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209716133|gb|BW668659.1|BW668659
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|7684769|gb|AW755417.1|AW755417
EST:     TAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: TAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|17963955|gb|BM270698.1|BM270698
EST:     GTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209699780|gb|BW655793.1|BW655793
EST:     GTGGCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209718048|gb|BW671881.1|BW671881
EST:     GTGGCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|213596684|gb|DB956048.1|DB956048
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
EST: gi|209709118|gb|BW658834.1|BW658834
EST:     GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAG                         GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT
genomic: GTGCCTCCATTCGGGACTGTAACTAGCCGCAGCACGAGGAGCAGCCTCAGgttctcccat ... gtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacctgtctctcgttttcattactgacgtttatttttattttttgtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG
                     tactgac  putative branch site (score: 1)
                             tttatttttatttttt  CT-rich tract
                          acgtttatttttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atattaacaacgatttctttcctcattttgtcgtgttaaaatttatcacctgtctctcgttttcattactgacgtttatttttattttttgtttttgaagGAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - tgtcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgac