Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254315535|gb|GR825344.1|GR825344EST: GATCTGCGCTAATCATCTCA TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|58015207|gb|CX701949.1|CX701949EST: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|10843761|gb|BF067030.1|BF067030EST: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|7924135|gb|AW830161.1|AW830161EST: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|254315536|gb|GR825345.1|GR825345EST: GATCTGCGCTAATCATCTCA -TTTG-CTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|254322065|gb|GR837479.1|GR837479EST: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|9984280|gb|BE658388.1|BE658388EST: GCTTCTCATGANNNAATCCAAGACGCTCAAGANCNGCGCTAATCATCTCA TTTNNNNNACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|193572192|gb|FK532415.1|FK532415EST: GATCTGCGCTAATCATCTCA TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|58019537|gb|CX706279.1|CX706279EST: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
EST:
gi|5510355|gb|AI856680.1|AI856680EST: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCA TTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
genomic: GCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCTAATCATCTCAgtatgtgctt ... attgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaattttgattttgagattttgtttatttgtttttttgttattgattgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCGTTTGGCATGCTAGGGATTTTGCTGATGGTGAACTCAAGGACGAGCTCTT
tattgat putative branch site (score: 3)
attttgagattttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtgctttcttcttttcttattcggttttgcgtctgtttttgcttcagaattttgattttgagattttgtttatttgtttttttgttattgattgttgcagTTTTGCCTACGATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCCTGCGTTTGGCATGCTAGGGATTTTGCTGATGGTGAACTCAAGGACGAGCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT