1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgctcttttattagttattttttctgattttttttaatacatgtttgtttctgttttgcatttgaccttggctcatattgttgttttgtctgtagatagTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAATGGACGGCCATATGGGAATGAGGAAAATCAGTTCTCACTGCTCTATCCCTGAT
species | Glycine max |
transcript | GLYMA10G35890.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGATAGEST: gi|193662810|gb|FK603248.1|FK603248
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTC----AGgttctctccc ... ctgtaga
EST: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAG TATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAATGGAEST: gi|193626503|gb|FK575737.1|FK575737
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGgttctctccc ... ctgtagatagTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAATGGA
EST: CCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGATAGEST: gi|193460050|gb|FK426595.1|FK426595
genomic: CCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTC----AGgttctctccc ... ctgtaga
EST: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGATAG
genomic: ACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTC----AGgttctctccc ... ctgtaga
ttgtttctgttttgcatttgaccttggctcatattgttgttttgtctgtagatagTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAATGGACGGCCATATGGGAATGAGGAAAATCAGTTCTCACTGCTCTATCCCTGAT
atttgac putative branch site (score: 4)
ttttgtct putative PPT
atattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctcttttattagttattttttctgattttttttaatacatgtttgtttctgttttgcatttgaccttggctcatattgttgttttgtctgtagatagTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAATGGACGGCCATATGGGAATGAGGAAAATCAGTTCTCACTGCTCTATCCCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg