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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacaatcaatccctactcccactcacctttgcaattcccttcaattatgttgtttttgtggcttcgaaatttgttgatccattcaattttatgtaactattattggtgcgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTC

Basic information

species Glycine max
transcript GLYMA10G35690.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393287|gb|EV263162.1|EV263162
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGgtaagtacaa ... tggtgcgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
EST: gi|23734175|gb|BU765314.1|BU765314
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGgtaagtacaa ... tggtgcgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
EST: gi|22525449|gb|BU084260.1|BU084260
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGgtaagtacaa ... tggtgcgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
EST: gi|23734386|gb|BU765421.1|BU765421
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGgtaagtacaa ... tggtgcgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
EST: gi|22525312|gb|BU084123.1|BU084123
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGgtaagtacaa ... tggtgcgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcttcgaaatttgttgatccattcaattttatgtaactattattggtgcgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTC
                                atgtaac  putative branch site (score: 3)
                      attcaattttatgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtacaatcaatccctactcccactcacctttgcaattcccttcaattatgttgtttttgtggcttcgaaatttgttgatccattcaattttatgtaactattattggtgcgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG