1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attggttctcatgccagttacattacatgttaagaattctaaattaatggaattgagatagctcggtttttaactttctgagactgttgacatattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATATGGAGAATCGCATGGAGGAGGTGTTGGTTGTATTATTGATGGATGTCC
species | Glycine max |
transcript | GLYMA10G35560.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTC AGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATEST: gi|193387927|gb|FK355178.1|FK355178
genomic: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCgtaagtcctc ... catattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACAT
EST: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTC AGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATEST: gi|207836572|gb|GD806569.1|GD806569
genomic: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCgtaagtcctc ... catattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACAT
EST: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTC AGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATEST: gi|193593647|gb|FK547565.1|FK547565
genomic: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCgtaagtcctc ... catattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACAT
EST: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTC AGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATEST: gi|37996069|gb|CF807658.1|CF807658
genomic: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCgtaagtcctc ... catattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACAT
EST: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTC AGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATEST: gi|19453140|gb|BM954550.1|BM954550
genomic: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCgtaagtcctc ... catattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACAT
EST: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTC AGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATEST: gi|6666177|gb|AW277636.1|AW277636
genomic: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCgtaagtcctc ... catattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACAT
EST: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTC AGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACAT
genomic: CCCCGGCTACCTCCGTCTCTCACTCCGTCCTCGTCTTCCCAAGAGACTTCgtaagtcctc ... catattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACAT
aatggaattgagatagctcggtttttaactttctgagactgttgacatattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATATGGAGAATCGCATGGAGGAGGTGTTGGTTGTATTATTGATGGATGTCC
tttttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggttctcatgccagttacattacatgttaagaattctaaattaatggaattgagatagctcggtttttaactttctgagactgttgacatattacagAGATACGGGCTGCTGGGAGTATCTATGGAAATCACTTTCGTGTTTCAACATATGGAGAATCGCATGGAGGAGGTGTTGGTTGTATTATTGATGGATGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - -catgcca
- - - - - - - - - - - -tacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgttg