Sequence
atgc intronic sequence ATGC exonic sequence...aattgatggatattccgcatcaatgttatggtgacaaaaaaagttatattctgagatgttaacttgggtaggaactaaagggtgtggtgtttggatgtagGATTATGTAGAGCAAGTCAAGTTGTTGATTTGTTCCCGACTGTGTCTCCTGAAATTATTGTTCGGGAGGCCAGGCTAGAGGACTGTTGGGAAGTGGCAGA
Basic information
species | Glycine max |
transcript | GLYMA10G35500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G35500.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0019g04360.t01 (Vitis vinifera), 3'ss of exon 1
aattgatggatattccg--catcaatgttatggtgacaaaaaaagttatattctgagatgttaacttgggtaggaactaaagggtgtggtgtttgg-atgtagGATTATGTAGAGCAAGTCAAGTTGTTGATTTGTTCCCGACTGTGTCTCCTGAAATTATTGTTCGGGAGGCCAGGCTAGAGGACTGTTGGGAAGTGGCAGA
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--ttactggaatcactggctgtcaagacgaatccaataatgtaaatttgggtttctg-tgcttgtacagatatattttggtaactgtgttatctggtgtatagGGATTTGCAGAGCCAGTCAAGTGGCTGAGCTATTTCCAACGGTGTTGCCCGAGATTGTCGTTCGGGAGGCCAGGTTAGAGGACTGTTGGGAAGTGGCTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5753327|gb|AI960614.1|AI960614EST: CCCATCTTGGGGTTCAACTCCTCCTCATGAATTCTCTCTCTCCCAATCAG GATTATGTAGAGCAAGTCAAGTTGTTGATTTGTTCCCGACTGTGTCTCCTG
genomic: CCCATCTTGGGGTTCAACTCCTCCTCATGAATTCTCTCTCTCCCAATCAGgtaccttatt ... ttggatgtagGATTATGTAGAGCAAGTCAAGTTGTTGATTTGTTCCCGACTGTGTCTCCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atattctgagatgttaacttgggtaggaactaaagggtgtggtgtttggatgtagGATTATGTAGAGCAAGTCAAGTTGTTGATTTGTTCCCGACTGTGTCTCCTGAAATTATTGTTCGGGAGGCCAGGCTAGAGGACTGTTGGGAAGTGGCAGA
aactaaa putative branch site (score: 2)
atgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattgatggatattccgcatcaatgttatggtgacaaaaaaagttatattctgagatgttaacttgggtaggaactaaagggtgtggtgtttggatgtagGATTATGTAGAGCAAGTCAAGTTGTTGATTTGTTCCCGACTGTGTCTCCTGAAATTATTGTTCGGGAGGCCAGGCTAGAGGACTGTTGGGAAGTGGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- ttgatgg
- - - - - - - - - - caatgtt
- - - - - - - - - - - - - - tggtgac
- - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - ttctgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtgtg