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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgagttatgacagattaaggtgttggtattgttatgttttcttactagtgatctgatttgtttgaaccgttgctgagttccttgattaattttctgcagAATGCAGAACAGAAGAAATGTGACAAGTGCTTTGCATACAAGCCTCCCAGGACTCATCATTGTCGAGTTTGCAGAAGGTGTATTCTGAAAATG

Basic information

species Glycine max
transcript GLYMA10G35270.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35270.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 1
atgagttatgacagattaaggtgttggtattgttatgttttcttactagtgatctgatttgtttgaaccgttgctgagt-tccttgattaattt-tctgcagAATGCAGAACAGAAGAAATGTGACAAGTGCTTTGCATACAAGCCTCCCAGGACTCATCATTGTCGAGTTTGCAGAAGGTGTATTCTGAAAATG
|  ||  ||      | ||    ||    |   |   |      |  | | || |   ||   |||   |||  || || | ||||  ||  |  | | |||  || | ||   | | | |||||||| || | |   ||||||||||||||| |||||||||| || ||||| ||||||||| || | |  |||
aaaagaaattttgtgtaaataatttttagtgaatccataagggcatcaattatat--cttacatgagaagttaatgtgtcttcttggctacctaatgtacagGGTGGACAATTAAGGCATTGTGACAAATGTTGTATCTACAAGCCTCCCAGGGCTCATCATTGCCGTGTTTGTAGAAGGTGTGTTTTAAGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtgatctgatttgtttgaaccgttgctgagttccttgattaattttctgcagAATGCAGAACAGAAGAAATGTGACAAGTGCTTTGCATACAAGCCTCCCAGGACTCATCATTGTCGAGTTTGCAGAAGGTGTATTCTGAAAATG
                                       gattaat  putative branch site (score: 3)
                                             ttttctgc  CT-rich tract
                                     ttgattaattttct  TA-rich tract