1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attttggggctgtggtttaatggggttcggttgttagaagcaatcattgagtttttggctctgatggggttttggggggaaattgtttctttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG
species | Glycine max |
transcript | GLYMA10G35230.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|193724791|gb|FK658075.1|FK658075
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: TCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|15813084|gb|BI785359.1|BI785359
genomic: TCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|308098577|gb|HO760318.1|HO760318
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|298165609|gb|HO011658.1|HO011658
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|298183380|gb|HO028593.1|HO028593
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|7286166|gb|AW598653.1|AW598653
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: GCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|298177777|gb|HO027330.1|HO027330
genomic: GCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|298182667|gb|HO031402.1|HO031402
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: ACTTCCAAACT-TTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|193481083|gb|FK444788.1|FK444788
genomic: ACTTCCAAA-TCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAEST: gi|298185154|gb|HO030367.1|HO030367
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCA
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCEST: gi|298174351|gb|HO017687.1|HO017687
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGAC
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGgtaatcatat ... ttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGC
attgagtttttggctctgatggggttttggggggaaattgtttctttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG
ctctgat putative branch site (score: 4)
ttgtttctttgttt putative PPT
aaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttggggctgtggtttaatggggttcggttgttagaagcaatcattgagtttttggctctgatggggttttggggggaaattgtttctttgtttgcagATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - -ggggctg
- - - - - - - - - - tggggtt
- - - - - - - - - - - - - - ggttgtt
- - - - - - - - - - - - - - - - - - - -gcaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggggg