Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaatcaaatcctaattcaatttctaacttcaccatcaataatttcaatttcagcttatttttattatttatttttctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT

Basic information

species Glycine max
transcript GLYMA10G35210.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193720828|gb|FK658992.1|FK658992
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|207680094|gb|GD663708.1|GD663708
EST:     GCTCAGATTCCCAACCTAGACAATGTTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|213611506|gb|DB960786.1|DB960786
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|193630879|gb|FK580512.1|FK580512
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|193520537|gb|FK475546.1|FK475546
EST:     CTCAGATTCCCAACTTAGACAATGCTCCTGTCAAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAAGAGCTCCTCAACATCCTCAAGTAAT
genomic: CTCAGATTCCCAACCTAGACAATGCTCCTGTCAA-TCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAA-GAGCTCCTCAACATCCTCAAG-AAT
EST: gi|193329364|gb|FK296546.1|FK296546
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|208134628|gb|GD927409.1|GD927409
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAA
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAA
EST: gi|193307787|gb|FK271949.1|FK271949
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCT
EST: gi|193643308|gb|FK590791.1|FK590791
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
EST: gi|193528642|gb|FK486860.1|FK486860
EST:     GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAG                         GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
genomic: GCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGgtcaaatcaa ... tctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccatcaataatttcaatttcagcttatttttattatttatttttctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT
                                     tttatttttctatttc  CT-rich tract
       aataatttcaatttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcaaatcaaatcctaattcaatttctaacttcaccatcaataatttcaatttcagcttatttttattatttatttttctatttcagGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC