1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacgcaacaaaaaaaccagccatacacttttgttgttttggcttgaggatcataaagtttcctcctttcttttctgggtttgttttctgaggggattttggtttcttgtttttttttggcagCCATTGAAGCTTGCAAGCAGCAATTGTCTGGAACTGCGAGTGAGTATAATTTGAATGGCCACTCGGAGTGTTCGGAGCAGACAACATCAACGGAAGGGCC
species | Glycine max |
transcript | GLYMA10G34780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGGTGTTCTCCAAAGAGCTACCTCTTTCCTTGGAACTGGTCACTCAAG CCATTGAAGCTTGCAAGCCAGCAATTGTCTTGGAACTGCGAGTGAGTATAAEST: gi|213596792|gb|DB964083.1|DB964083
genomic: TCAGGTGTTCTCCAAAGAGCTACCTCTTTCCTTGGAACTGGTCACTCAAGgtaacgcaac ... tttttggcagCCATTGAAGCTTGCAAG-CAGCAATTGTC-TGGAACTGCGAGTGAGTATAA
EST: TCAGGTGTTCTCCAAAGAGCTACCTCTTTCCTTGGAACTGGTCACTCAAG CCATTGAAGCTTGCAAGCAGCAATTGTCTGGAACTGCGAGTGAGTATAATTEST: gi|20448446|gb|BQ252570.1|BQ252570
genomic: TCAGGTGTTCTCCAAAGAGCTACCTCTTTCCTTGGAACTGGTCACTCAAGgtaacgcaac ... tttttggcagCCATTGAAGCTTGCAAGCAGCAATTGTCTGGAACTGCGAGTGAGTATAATT
EST: TCAGGTGTTCTCCAAAGAGCTACCTCTTTCCTTGGAACTGGTCACTCAAG CCATTGAAGCTTGCAAGCAGCAATTGTCTGGAACTGCGAGTGAGTATAATT
genomic: TCAGGTGTTCTCCAAAGAGCTACCTCTTTCCTTGGAACTGGTCACTCAAGgtaacgcaac ... tttttggcagCCATTGAAGCTTGCAAGCAGCAATTGTCTGGAACTGCGAGTGAGTATAATT
tcttttctgggtttgttttctgaggggattttggtttcttgtttttttttggcagCCATTGAAGCTTGCAAGCAGCAATTGTCTGGAACTGCGAGTGAGTATAATTTGAATGGCCACTCGGAGTGTTCGGAGCAGACAACATCAACGGAAGGGCC
ttttggtttcttgttt CT-rich tract
tttcttgttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgcaacaaaaaaaccagccatacacttttgttgttttggcttgaggatcataaagtttcctcctttcttttctgggtttgttttctgaggggattttggtttcttgtttttttttggcagCCATTGAAGCTTGCAAGCAGCAATTGTCTGGAACTGCGAGTGAGTATAATTTGAATGGCCACTCGGAGTGTTCGGAGCAGACAACATCAACGGAAGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG