Sequence
atgc intronic sequence ATGC exonic sequence...acttttttttcccctctgttatatatgctgaacagttgtttgagtggatttatctactcttgtaaattatcaccaaatatctttcttcttatgtttaaagGTTGTGAGGGCAAAGAAGAAGGACACTGGAATTGTGTACGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGT
Basic information
species | Glycine max |
transcript | GLYMA10G34430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g65230.1 (Oryza sativa), 3'ss of exon 1
---acttttttttcccctctgttatatatgctgaacagttgtttgagtggatttatctactcttgtaaattatcaccaaatatctttcttcttatg----tttaaagGTTGTGAGGGCAAAGAAGAAGGACACTGGAATTGTGTACGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGT
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gtgttttgatttgattgatcggttcgcatgcgatgatgccccctgatc--atccgcgttctcgtggttcttgtgcctggtggtgtcattcatggtggaatttggcagGTGGTGAGGGCCAAGAAGAAGGATACGGGGAATGTGTACGCGCTCAAGATCATGGACAAGAAGTTCATCACCAAGGAGAACAAGATCTCCTACGTCAAGA
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G10540.1 (Arabidopsis thaliana), 3'ss of exon 1
----------------------------------------------------------------acttttttttcccctctgttatatatgctgaacagttgttt----gagtgga---tttatctactcttgtaaattatcaccaaatatctttcttcttatgtttaa-------agGTTGTGAGGGCAAAGAAGAAGGACACTGGAATTGTGTACGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGT
||| | | |||| || | | || || | |||| || | | | | ||| ||| | | | || || ||||||| ||| ||||||| ||||| ||||||||||| | ||||| |||||| || |||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| || |
gtttcattttttctattcttttcacattttttttcctgtaaaaatctcatcttttctgcaatttggtttgaatcatgaatcaattcatatcttggagattttttatgggaaatggaaaactttttcattgctctaagttaactttagctggatt-ctgcttatgtgtaattgaatcagGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTGAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAAT
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 3'ss of exon 1
------------------acttttttttccc-ctctgttatatatgctgaaca-gttgtttgagtggatttatctactcttgtaaattatcacca---------aatatctttcttcttatgtttaa--------agGTTGTGAGGGCAAAGAAGAAGGACACTGGAATTGTGTACGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGT
| ||| | || || || | || | | | | | | || ||||| | | | | | | | | | ||| | | || | | ||||||| ||||||||||||||||| ||||||| |||||| || || ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||||||| |
gtttctattttcattactattttctattgtggctttgattcatgaacccagctcgattctctggttgatttttttgttgcaatgtggtgttgatattggaaaggattggtttttgacctgtgggtgattcatattagGTTGTTAGGGCAAAGAAGAAGGAAACTGGAACTGTGTATGCTTTAAAGATTATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTGAAAT
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 2
acttttttttcccctctgttatatatgctgaacagttgtttgagtggatttatctactcttgtaaattatcaccaaatatctttcttctta--tgtttaaagGTTGTGAGGGCAAAGAAGAAGGACACTGGAATTGTGTACGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGT
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tgggcacttacgcatctggaattgatgtctggtt-ttaattgttagcatttgggta-tgtggttatttatttgtttctttattttatatcaattgactccagGTTGTGAGGGCAAGGAAGAAGGACACTGGAATTGTGTACGCTTTGAAAATCATGGACAAAAAGTTCATCACAAAAGAAAATAAAACAGCTTATGTGAAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208291228|gb|GE094534.1|GE094534EST: TCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAG GTTGTGAGGGCAAAGAA
genomic: TCCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGgtctcacaca ... atgtttaaagGTTGTGAGGGCAAAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatttatctactcttgtaaattatcaccaaatatctttcttcttatgtttaaagGTTGTGAGGGCAAAGAAGAAGGACACTGGAATTGTGTACGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGT
tctttcttcttatgtt CT-rich tract
ttcttatgtttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acttttttttcccctctgttatatatgctgaacagttgtttgagtggatttatctactcttgtaaattatcaccaaatatctttcttcttatgtttaaagGTTGTGAGGGCAAAGAAGAAGGACACTGGAATTGTGTACGCATTGAAGATCATGGACAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - -tttcccc
- - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - -ttgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaaa