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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgttaatccttcttcctttctccattccatctctttatttctataatccaaatcgaatcgaatgagaatcagattccttctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG

Basic information

species Glycine max
transcript GLYMA10G34370.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532166|gb|EH260299.1|EH260299
EST:     CTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: CTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
EST: gi|192332512|gb|FK024273.1|FK024273
EST:     CAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: CAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
EST: gi|17022153|gb|BM093187.1|BM093187
EST:     CTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: CTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
EST: gi|26047793|gb|CA784466.1|CA784466
EST:     CAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: CAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
EST: gi|213617950|gb|DB967312.1|DB967312
EST:     CTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: CTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
EST: gi|10845400|gb|BF068537.1|BF068537
EST:     CAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: CAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
EST: gi|24205361|gb|BU964614.1|BU964614
EST:     CAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: CAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
EST: gi|209709966|gb|BW681009.1|BW681009
EST:     GGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: GGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
EST: gi|7589574|gb|AW705345.1|AW705345
EST:     CAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCG                         ATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT
genomic: CAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGgtttgtttgt ... ctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttctataatccaaatcgaatcgaatgagaatcagattccttctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG
                                       ttccttctttttcc  CT-rich tract
     tctataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtttgttaatccttcttcctttctccattccatctctttatttctataatccaaatcgaatcgaatgagaatcagattccttctttttccagATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCACCG