Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttctctataagcatgtgtctttcattctatgtttttcttctggaaattttttgtgtttgaaaaaagatatatatatatatatatatatatatatatatatatatatatatatattttgttaatgtgagtggttttggtttgattaaaaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAATGGAGTAGACCCCACTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTT

Basic information

species Glycine max
transcript GLYMA10G34280.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34280.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G10520.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttttctctataagcatgtgtctttcattctatgtttttcttctggaaattttttgtgtttgaaaaaagatatatatatatatatatatatatatatatatatatatatatatatattttgttaatgtgagtggttttggtttgattaaaaata-aatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAG------CAAATGGAGTAGACCCCACTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTT
                                                                                  ||   |||||||  ||  |||||||| |  | | || || ||||| || |  | |   |       | || || |   ||||||||||||||| |||||| |||||||| | ||||||||| || |||       || ||| |||    | ||  |||||||| ||||  |  |||||||        
---------------------------------------------------------------------------------gtaaccatatatacttagttatatata-agctctttacatgttgtttatatatgcgagctaatgaacaatataattgtgatagGATACTGGAGATAGCACCAGCAGCAAAAGGCTTGTTCTCTTTCCTAAGAGACTCAGATGAAGTCCCTCACAACAATCCTAAACTCAAAGCTCATGCTGTT------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214005980|gb|DB988076.1|DB988076
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTACAATACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTGCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770710|gb|AI973884.1|AI973884
EST:     AGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: AGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|151409766|gb|EV279574.1|EV279574
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213613799|gb|DB961296.1|DB961296
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770807|gb|AI973981.1|AI973981
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213606496|gb|DB971120.1|DB971120
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213591340|gb|DB959882.1|DB959882
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209711004|gb|BW665260.1|BW665260
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213606474|gb|DB958970.1|DB958970
EST:     AAGCATTCAAGGCAAACATTTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: AAGCATTCAAGGCAAACA-TTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770623|gb|AI973797.1|AI973797
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5820165|gb|AI988371.1|AI988371
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213617527|gb|DB972969.1|DB972969
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213606773|gb|DB961012.1|DB961012
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5820469|gb|AI988675.1|AI988675
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5820285|gb|AI988491.1|AI988491
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209701396|gb|BW660911.1|BW660911
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213603953|gb|DB984130.1|DB984130
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTTTACAATTC                         GATACTGGAGAAAGCACCTGTAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770720|gb|AI973894.1|AI973894
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213600621|gb|DB956411.1|DB956411
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209707691|gb|BW676670.1|BW676670
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209700523|gb|BW660910.1|BW660910
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209720807|gb|BW677381.1|BW677381
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|151411022|gb|EV280833.1|EV280833
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|214008251|gb|DB989793.1|DB989793
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213593407|gb|DB977094.1|DB977094
EST:     AAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTT-TAACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTTTCATTACTAGCAA
genomic: AAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCT-ACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAA
EST: gi|5770430|gb|AI973604.1|AI973604
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213595138|gb|DB972072.1|DB972072
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770570|gb|AI973744.1|AI973744
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209710190|gb|BW658912.1|BW658912
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209720808|gb|BW677382.1|BW677382
EST:     ATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: ATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5820241|gb|AI988447.1|AI988447
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|151408358|gb|EV278166.1|EV278166
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770634|gb|AI973808.1|AI973808
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209698679|gb|BW652480.1|BW652480
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770751|gb|AI973925.1|AI973925
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209718943|gb|BW674796.1|BW674796
EST:     AAGCATTCAAGGC-AACATTTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: AAGCATTCAAGGCAAACA-TTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209702795|gb|BW652784.1|BW652784
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5820481|gb|AI988687.1|AI988687
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770650|gb|AI973824.1|AI973824
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770574|gb|AI973748.1|AI973748
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213617733|gb|DB967235.1|DB967235
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213614116|gb|DB964888.1|DB964888
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209709112|gb|BW658828.1|BW658828
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770437|gb|AI973611.1|AI973611
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213595519|gb|DB977927.1|DB977927
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTG-TCATCATTTCTAGCAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTC-TCATTTCTAGCAA
EST: gi|209728760|gb|BW666810.1|BW666810
EST:     CATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: CATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770639|gb|AI973813.1|AI973813
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5820447|gb|AI988653.1|AI988653
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770953|gb|AI974127.1|AI974127
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|5770709|gb|AI973883.1|AI973883
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|151413031|gb|EV282839.1|EV282839
EST:     GAAGCATTCAAGGCAAGCATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|151410332|gb|EV280147.1|EV280147
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209700242|gb|BW664467.1|BW664467
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209709113|gb|BW658829.1|BW658829
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|213603685|gb|DB966813.1|DB966813
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGTAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
EST: gi|209722949|gb|BW668791.1|BW668791
EST:     GCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTC                         GATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA
genomic: GCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACAATTCgtaagttttc ... aaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatatatatattttgttaatgtgagtggttttggtttgattaaaaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAATGGAGTAGACCCCACTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTT
                              ttttggtttgattaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttctctataagcatgtgtctttcattctatgtttttcttctggaaattttttgtgtttgaaaaaagatatatatatatatatatatatatatatatatatatatatatatatattttgttaatgtgagtggttttggtttgattaaaaataaatagGATACTGGAGAAAGCACCTGCAGCAAAGGACTTGTTCTCATTTCTAGCAAATGGAGTAGACCCCACTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG