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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaatatttgaattatattttttttctgaactgcatccatttgtacgcaaaagttttaacttaattctttgttactaattttatgtttatttctttcagATTCTGAGGAGAAGCCAACATACATTAGGTTTCTAGTATCAAACTCTGCGGCTGGTTCAGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTC

Basic information

species Glycine max
transcript GLYMA10G34220.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34220.2 (Glycine max), 3'ss of exon 1
lower sequence: AT5G04430.1 (Arabidopsis thaliana), 3'ss of exon 2
tctaatatttgaattatattttttttctgaactgcatccatttgtacgcaaaagttttaacttaattctttg-ttactaattttatgtttatttctttcagATTCTGAGGAGAAGCCAACATACATTAGGTTTCTAGTATCAAACTCTGCGGCTGGTTCAGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTC
|  |||       ||  | ||   |  | | ||  || |   ||      |  |    |   ||  | ||||  ||   | | | | |||  |  ||||||||||||  |||||||||||| ||||| ||||||| ||||| ||  | || |||||||| || ||||| || || || || || |||||||| |||||| |
ttaaattacgctgtttcaattcaatgattagctcaatactgatgcggtttagtgaaccatgctatctatttgactatctaatgtgt-tttcctcttttcagATTCTGCTGAGAAGCCAACACACATTCGGTTTCTTGTATCCAATGCGGCAGCTGGTTCCGTCATTGGGAAAGGTGGCTCGACCATCACTGAATTTCAGGC

upper sequence: GLYMA10G34220.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 3
tctaatatttgaattatattttttttctgaactg-catccatttgtacgcaaaagttttaacttaattctttgttactaattttatgtttatttctttcagATTCTGAGGAGAAGCCAACATACATTAGGTTTCTAGTATCAAACTCTGCGGCTGGTTCAGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTC
      || | |   ||    |   |    |    |||  |    | |  |      || ||| |    |||||      ||||||| ||  | || ||||||| |  ||||||| | ||||||||||| ||||| ||||||||  |||| |||||||| || ||||||||||| ||||||||||| | ||||||||||||
-aaggcatgttatcaatggcatgcattaagatgaacatgtaggcttgcttacttcccttcactaatcaatttgtcttcttttttatgctttctactgtcagATTTTATGGAGAAGTCTACATACATTAGATTTCTTGTATCAAATGCTGCAGCTGGTTCTGTAATTGGAAAGGGTGGTTCAACTATTAATGATTTTCAGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgcaaaagttttaacttaattctttgttactaattttatgtttatttctttcagATTCTGAGGAGAAGCCAACATACATTAGGTTTCTAGTATCAAACTCTGCGGCTGGTTCAGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTC
                            tactaat  putative branch site (score: 1)
                                       tgtttatttctttc  putative PPT
         ttttaacttaattctt  TA-rich tract