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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaactttattgttttcagaatgcatgttcggttttcagcttattgggtctgattgaatttccatcccttttgttttgcttctcagTGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGAGTGCTATGGTGTCTTCTGCCTTACCTATGATTTGAGGGCT

Basic information

species Glycine max
transcript GLYMA10G34150.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254325573|gb|GR838454.1|GR838454
EST:     CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAA                         TGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
genomic: CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAAgttagtaact ... tgcttctcagTGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
EST: gi|21888548|gb|BQ741761.1|BQ741761
EST:     CCACTTCATAGAACTCAACATGCTAGGATTTGTTGTTCTGTTGCCCCAAA                         TGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
genomic: CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAAgttagtaact ... tgcttctcagTGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
EST: gi|213589352|gb|DB961685.1|DB961685
EST:     CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAA                         TGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA
genomic: CCACTTCATAGAACTCAACAAGCTAGGATTTGTTGTTCTGTTGCCCCAAAgttagtaact ... tgcttctcagTGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcagcttattgggtctgattgaatttccatcccttttgttttgcttctcagTGAAGTGCAGGTGCCAGCTGTGAAAACCTCGGATCCCAAGAGTAAGCCTGAGTGCTATGGTGTCTTCTGCCTTACCTATGATTTGAGGGCT
                gtctgat  putative branch site (score: 4)
                           tttccatcccttttgt  putative PPT
                     attgaattt  TA-rich tract