1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaataaatttttaacctaatcattgctgctaaatgcattcttcatcctaacttaacagctctgatttgaattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTTACGCTGATCACATAATTCCTCACATTCTGCATCT
species | Glycine max |
transcript | GLYMA10G34010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAATTTTTTGCAGCAATGGCTTCTCATTCTGCTG CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTTEST: gi|298191014|gb|HO038493.1|HO038493
genomic: CAATTTTTTGCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: GCAGCAATGGCTTCTCATTCTGCTG CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTTEST: gi|15288312|gb|BI472203.1|BI472203
genomic: GCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: CAGCAATGGCTTCTCATTCTGCTG CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTTEST: gi|298180389|gb|HO025590.1|HO025590
genomic: CAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: GCAGCAATGGCTTCTCATTCTGCTG CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTTEST: gi|51337031|gb|CO980897.1|CO980897
genomic: GCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: TTTTTTGCAGCAATGGCTTCTCATTCTGCTG CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTTEST: gi|298180981|gb|HO022420.1|HO022420
genomic: TTTTTTGCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
EST: GCAGCAATGGCTTCTCATTCTGCTG CCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
genomic: GCAGCAATGGCTTCTCATTCTGCTGgtaataaatt ... aattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTT
tgctgctaaatgcattcttcatcctaacttaacagctctgatttgaattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTTACGCTGATCACATAATTCCTCACATTCTGCATCT
atttgaattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaatttttaacctaatcattgctgctaaatgcattcttcatcctaacttaacagctctgatttgaattttgaagCCACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCTTTACGCTGATCACATAATTCCTCACATTCTGCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT