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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttctttcttaatccttatgattttggtttccgattcttattctttgaagcttaacaatctgtgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG

Basic information

species Glycine max
transcript GLYMA10G33990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33990.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G10620.1 (Arabidopsis thaliana), 3'ss of exon 1
gttcgttctttcttaatccttatgattttggtttccgattcttattctttgaagcttaacaatctgt----gtt--gtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
    ||  |   | |      || |||        |   |  |||| |  || | ||| |    | |     ||  |||||||||||| | || |||||| | || ||||||| |||||||||||||||||||
----gtgatgattgatgatggataattggaaacagcttcttctattttccgatgattagctccttctcacaattaagtgcagATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401156|gb|EV270970.1|EV270970
EST:     AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAGgttcgttctt ... tgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
EST: gi|5770603|gb|AI973777.1|AI973777
EST:     AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTAAC
genomic: AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAGgttcgttctt ... tgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
EST: gi|192294285|gb|FG986374.1|FG986374
EST:     AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAGgttcgttctt ... tgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
EST: gi|8282558|gb|BE020119.1|BE020119
EST:     AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAGgttcgttctt ... tgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
EST: gi|7926045|gb|AW832071.1|AW832071
EST:     AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAGgttcgttctt ... tgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
EST: gi|31466222|gb|CD408250.1|CD408250
EST:     TAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
genomic: TAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAGgttcgttctt ... tgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
EST: gi|24135720|gb|BU926230.1|BU926230
EST:     AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAGgttcgttctt ... tgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
EST: gi|151411273|gb|EV281084.1|EV281084
EST:     AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGTAGGAACGTTGGTATCTGTCTCATGAACAATCACAAAAAGgttcgttctt ... tgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgattttggtttccgattcttattctttgaagcttaacaatctgtgttgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATGCTTGGCAAATGCCTCAG
                                gcttaac  putative branch site (score: 3)
                attcttatt  TA-rich tract