1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgtgttaattagttctacatattccaggtggaaaaataatcaccttacatttactgtcattttcttttatctgtgatatgaggtttttgtttgtgcagGATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTACATTATCCCTTCCATCAGCTTTGATGGATCGAAGTCAAACAAGAATCAAC
species | Glycine max |
transcript | GLYMA10G33400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACAGAAACTCTCCCATCTCTTTCCCAACTCCTCCTCCTCCTCGCCCCAG GATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTACEST: gi|298196658|gb|HO041401.1|HO041401
genomic: CACAGAAACTCTCCCATCTCTTTCCCAACTCCTCCTCCTCCTCGCCCCAGgtatcttttt ... gtttgtgcagGATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTAC
EST: CACAGAAACTCTCCCATCTCTTTCCCAACTCCTCCTCCTCCTCGCCCCAG GATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTACEST: gi|298174160|gb|HO017496.1|HO017496
genomic: CACAGAAACTCTCCCATCTCTTTCCCAACTCCTCCTCCTCCTCGCCCCAGgtatcttttt ... gtttgtgcagGATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTAC
EST: CACAGAAACTCTCCCATCTCTTTCCCAACTCCTCCTCCTCCTCGCCCCAG GATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTAC
genomic: CACAGAAACTCTCCCATCTCTTTCCCAACTCCTCCTCCTCCTCGCCCCAGgtatcttttt ... gtttgtgcagGATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTAC
cttacatttactgtcattttcttttatctgtgatatgaggtttttgtttgtgcagGATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTACATTATCCCTTCCATCAGCTTTGATGGATCGAAGTCAAACAAGAATCAAC
accttac putative branch site (score: 3)
tttttgttt putative PPT
tcattttcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtgttaattagttctacatattccaggtggaaaaataatcaccttacatttactgtcattttcttttatctgtgatatgaggtttttgtttgtgcagGATAGTCCATATTCGCAAGAGGATAAACCTTTGTCTTCATATTTATCTTACATTATCCCTTCCATCAGCTTTGATGGATCGAAGTCAAACAAGAATCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
cttgtgt
- - - - - - - - - - - - - - ggtggaa
- - - - - - - - - - - - - - - - - - - - - - ccttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatatg