1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agacagtacttttcactaaatgggttgtttaaaaaatttggatttaaatttcttctgatatgagtaacaactatatttatttcatgtgacgcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGCAGGCCACAGGCACCACAACTTATCTGTTCTTCAGCAGCATTGTGCTTT
species | Glycine max |
transcript | GLYMA10G33350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCAT ACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGEST: gi|298185669|gb|HO030882.1|HO030882
genomic: TGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCATgtaagtcttc ... gcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
EST: GGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCAT ACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGEST: gi|213591840|gb|DB973405.1|DB973405
genomic: -GCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCATgtaagtcttc ... gcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
EST: TGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCAT ACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGEST: gi|298192764|gb|HO033198.1|HO033198
genomic: TGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCATgtaagtcttc ... gcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
EST: GGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCAT ACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGEST: gi|298184162|gb|HO029375.1|HO029375
genomic: -GCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCATgtaagtcttc ... gcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
EST: GGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCAT ACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGEST: gi|298179629|gb|HO024844.1|HO024844
genomic: -GCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCATgtaagtcttc ... gcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
EST: GGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCAT ACTTGCCGAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGEST: gi|298164832|gb|HO010829.1|HO010829
genomic: -GCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCATgtaagtcttc ... gcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
EST: GGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCAT ACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGEST: gi|298182340|gb|HO026515.1|HO026515
genomic: -GCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCATgtaagtcttc ... gcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
EST: GGCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCAT ACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
genomic: -GCACAGAGAAGGGTCAGAAATGACTTAGAAAATTCTCTACCAAAACCATgtaagtcttc ... gcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAG
aaatttcttctgatatgagtaacaactatatttatttcatgtgacgcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGCAGGCCACAGGCACCACAACTTATCTGTTCTTCAGCAGCATTGTGCTTT
gagtaac putative branch site (score: 2)
cattctc putative PPT
taacaactatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agacagtacttttcactaaatgggttgtttaaaaaatttggatttaaatttcttctgatatgagtaacaactatatttatttcatgtgacgcattctcagACTTGCCAAGAGCATTGAAAGCTCCTGATACGGGTCACCCAAATGGAACAGCAGGCCACAGGCACCACAACTTATCTGTTCTTCAGCAGCATTGTGCTTT
- - - - - - - - - - tgggttg
- - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg