1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgatcatttccgtcccctttttgttatccacaaatgtgtttctgtttcttatgatgatgagatttgtagtatcataccatttgcgaaacagTAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGCAAGAGGAAGAAGGCAAACATCTGGTGACTGGAAAGACAACCGTGTGCAC
species | Glycine max |
transcript | GLYMA10G33100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCCTTTCTTCCGGTCGCACATCTCTGTTCACTGCTCGTCCCTTTTCCAG TAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGCEST: gi|17022576|gb|BM093610.1|BM093610
genomic: ACCCTTTCTTCCGGTCGCACATCTCTGTTCACTGCTCGTCCCTTTTCCAGgtttgatcat ... tgcgaaacagTAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGC
EST: ACCCTTTCTTCCGGTCGCACATCTCTGTTCACTGCTCGTCCCTTTTCCAG TAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGCEST: gi|298175481|gb|HO015114.1|HO015114
genomic: ACCCTTTCTTCCGGTCGCACATCTCTGTTCACTGCTCGTCCCTTTTCCAGgtttgatcat ... tgcgaaacagTAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGC
EST: ACCCTTTCTTCCGGTCGCACATCTCTGTTCACTGCTCGTCCCTTTTCCAG TAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGC
genomic: ACCCTTTCTTCCGGTCGCACATCTCTGTTCACTGCTCGTCCCTTTTCCAGgtttgatcat ... tgcgaaacagTAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGC
tgtttctgtttcttatgatgatgagatttgtagtatcataccatttgcgaaacagTAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGCAAGAGGAAGAAGGCAAACATCTGGTGACTGGAAAGACAACCGTGTGCAC
tttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatcatttccgtcccctttttgttatccacaaatgtgtttctgtttcttatgatgatgagatttgtagtatcataccatttgcgaaacagTAAAAGTGTACTCTGCTTGTTGCTGTGATGGTGGTCGAAGAAGAAAATGGCAAGAGGAAGAAGGCAAACATCTGGTGACTGGAAAGACAACCGTGTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG